Manihot esculenta (cassava): 110619355
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Entry
110619355 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110619355
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110619355
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Helicases
110619355
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GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
RNA_pol_Rpc4
Motif
Other DBs
NCBI-GeneID:
110619355
NCBI-ProteinID:
XP_021618440
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All DBs
Position
7:complement(33603759..33609772)
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AA seq
589 aa
AA seq
DB search
MDGESPNPNRALTETRFSDLKPPLSEPVLEALTLTGFEYCTPVQAATIPLLCSYKDVAVD
AATGSGKTLAFVVPLVEILRRASASHKSHQVMGIILSPTRELSSQIYNVAQPFIATLSNV
KSILLVGGGDVKADVKKIEEEGANILIGTPGRLYDIMERVDFLDFRNLEVLILDEADRLL
DMGFQKQINSIMAHLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAETKSLTDSAS
SHSKTPSGLQLEYLECEEDNKSSQLVDLLIKNKSKKIIVYFMTCACVDYWGVVLPRLTAL
KGFSLIPLHGKMKQTAREKALASFTSLTNGILLCTDVAARGLDIPGVDCIVQYDPPQDPN
VFIHRVGRTARLGRQGSAIVFLLPKEEAYVEFLHIRRVPLQKKEKSDHAPDVVPQIRSAA
KKDRDVMEKGLRAFVSFIRAYKEHHCSYIFRWKELEIGKLGMGFGLLQLPSMPEVKHHSL
STVGFTPVEDIKLEDIKYKDKSREKQRKKNLQAKKEAQQQEAKPQKPKKNPNDAAPTVMR
KKTAKQRRAAQTVEDEDELAREYRLLKKLKKGTIDESEYAKLTGTEELL
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgaatcgccgaatccgaatagagcgttaacggaaacgcgcttctccgatcta
aaaccgccactctcagagccagttctcgaagctctaacattaacaggtttcgagtattgc
acgccggtccaagcagccacgattccactactttgcagctacaaggatgttgcagtcgac
gctgcaaccggctctggaaaaaccctcgctttcgtagtcccacttgtcgagattctccgt
cgagcctccgcttctcacaaatcccaccaggtgatggggataattctctctcctactagg
gagttgtcatcacaaatatataacgttgctcagcctttcattgcaactttgtcgaatgtt
aagtcgattcttcttgttggcggaggagatgtgaaagctgatgtgaagaaaatagaggag
gaaggagctaatatattgattggaacgcctggaagactttatgacatcatggaacgtgtg
gatttcttggactttcgaaacctggaggttttaatcttggatgaggctgatcgactcttg
gatatgggattccaaaagcagataaattccattatggctcacttacccaagcttcgcagg
actggtcttttttcagctactcaaactgaggcagttgaagagttatccaaagctggacta
aggaatcctgtgagggttgaagttcgagcagaaacaaaatcattgactgactctgcatct
tcacattcaaaaacaccttcaggccttcaacttgagtatttagaatgcgaagaagataat
aaatcgtctcagcttgttgatctccttattaagaacaagtcaaagaagatcatagtatat
tttatgacgtgtgcatgtgttgattattggggagttgttcttccacgtcttactgcttta
aagggcttctcactgattccccttcatgggaagatgaagcagactgcaagagagaaagca
ttggcttcatttacatctctcacaaatggcattcttctatgtacggatgttgcagcacgt
ggacttgatattccaggcgttgattgtatagtgcagtatgatcctcctcaggatccaaat
gttttcattcacagagttggccgaactgctcggttgggtagacaaggaagtgcaatcgtt
ttccttttgccaaaggaggaagcttatgttgaatttctgcatataagaagggttcctctt
caaaagaaggaaaaatcagatcatgctcctgatgttgttcctcagatacgatctgctgcc
aagaaggaccgagatgtcatggagaagggactgagagcatttgtttcatttatccgtgca
tataaagagcatcattgttcgtacattttcagatggaaagaacttgaaattgggaaattg
ggcatgggatttggcttattgcagctcccttcaatgcctgaggtaaagcaccactcactt
tcaaccgtcggttttactccagttgaggacatcaaattggaggacatcaagtacaaggat
aaatctcgggagaaacaaaggaagaagaatttgcaagcgaagaaagaagcacaacagcaa
gaagcaaaacctcagaagcccaagaagaaccccaatgacgctgcccctactgttatgagg
aagaaaaccgctaagcagagacgagctgcgcagacggttgaagatgaagatgaattggcg
cgggagtatcgattactgaagaagctaaagaaggggaccatcgatgaaagtgaatatgca
aagttaacaggaactgaagaattactataa
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