Manihot esculenta (cassava): 110620061
Help
Entry
110620061 CDS
T05761
Name
(RefSeq) protein PAT1 homolog 2 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110620061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110620061
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110620061
mRNA degradation factors
5'-3' decay
Decapping complex
110620061
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF6712
Motif
Other DBs
NCBI-GeneID:
110620061
NCBI-ProteinID:
XP_021619323
LinkDB
All DBs
Position
8:complement(9542186..9572358)
Genome browser
AA seq
727 aa
AA seq
DB search
MEKGAGLECLSDMDDLASTFAKLNRVVTGPRNVGVIGDRGSGSFSRESSSATDWAQDEEL
ASWLDQQMFDIENAQEAKRWSSQPQSSSARFSESKLLYRTSSYPQEQPQLHRFSSEPILV
PKSSFTSFPPPGGRNQQASHDHLNNSSLTSAPQPFSAPNFSPSSNSNLHLAGMHHGLRYH
GNMPAITSPGHSFSSRPQNHWVNNAGLLQVDQSSLLQSILQQQLSHKNGLMSAQLMSPQQ
QRLHTGIQPSLAHFAAVQSHLYNAHPSSAHKMVFGLSDQKHKSQKGRQNTRLSQQSSDAS
SQKSDGGGFQFRSKYMTAEEIESILKMQHAATHNNDPYVDDYYHQASLTKRSGGSRAKQH
FCPSHMKELHSRGRNSTDQQSHLHVNAVGRIPVPSIRKLQPLLDVDAPGSADRNSEEISE
RSLEQEPMFAARIAVEDALCLILDVEDIDRFLQFNHPQDGGSQLRYKRQILLEGLATSLQ
LVDPLGQSGSTVGLAPKDDIVFLRIVSLPKGRKFISKFLQLLLPGSKLTRIVCMAIFRHL
RFLFGSVSSDTGAAEATMNLVKTVSASVNSMDLHALSACLVAVVCSSEQPPFRPLGSPAG
DGASVILKCLLEKATKLLNDPHTAANCGGPNFALWQASFDEFFDLLTKYCLIKYDTILQS
LYAKDPTSTESIDVEVRAATKFEMPVELLRACLPHTNERQMELLRHFGQQRNPITGSGLI
NSETVRS
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagggtgcaggcttagaatgtttatctgatatggatgatctagcaagtacattt
gcgaagttgaacagagttgtcacaggaccaagaaatgttggagttattggagatagagga
tctggatccttttcaagggaaagttcatctgccactgattgggcacaagatgaagaactt
gctagttggttagatcagcaaatgtttgatattgaaaatgctcaggaagccaagagatgg
tcatcacagcctcaatcttcatctgctcgtttctcagaatcaaaacttttgtacagaact
tcctcgtatccccaggagcaaccacagttgcaccgcttctcaagtgaaccaattcttgta
cccaaatcaagtttcacatctttcccccctccaggtggcagaaaccaacaggcttcacat
gatcacttgaataactcctctcttactagtgcaccacagcccttctctgctcccaacttt
tccccttcgtccaactctaatcttcatctggctggcatgcatcatgggttacgttaccat
ggaaatatgcctgcaatcacctctcctggccattcttttagtagcaggccacaaaatcac
tgggttaacaatgctggtctactccaagtagatcaatctagcctcttacaaagcatattg
cagcagcaattatcccataaaaatggtctaatgtctgcacagctgatgtcaccacagcag
cagagactgcatactggaatccagccatctttggctcattttgcagcagtgcaatcccac
ctttataatgcccacccttcatcagcacataaaatggtgtttggattatcggatcaaaaa
cacaaatcgcaaaagggcagacagaatactcgtctctctcaacaaagctctgatgctagc
agtcagaaaagtgatggtggtggttttcaatttagatcaaagtacatgacagctgaagag
atagaaagtattctgaaaatgcagcacgctgccacacataacaatgacccatatgtagat
gattattatcatcaagctagtcttaccaaaagatctggaggatccagagcaaaacaacat
ttctgcccatctcatatgaaagagcttcattctcgaggtcgtaacagcacagaccagcaa
tctcatctacatgttaatgctgttgggaggattcctgtgccttccatacgtaagctacag
cctcttcttgatgttgatgcacctggttctgctgacagaaactctgaagaaatatctgag
aggtctctagaacaggaaccaatgtttgctgctagaattgctgttgaagatgccctatgt
cttattcttgatgtggaggatattgatcggtttctacagttcaatcatccccaagatggt
gggtctcaactcagatataagcgtcagatattgcttgaaggattagccacatcacttcag
cttgttgatccacttggccaaagtggcagcacagtaggcctggcccccaaggatgatatt
gtgttccttagaatagtttctcttcccaagggtcgaaagtttatctctaagttccttcag
cttcttttacctggtagcaaactcacccgaattgtctgtatggctattttccgtcacctg
aggtttttgtttggcagtgtttcttcagatacaggagcagctgaggcaactatgaatctt
gtgaagactgtctcagcgtctgttaacagcatggatcttcatgcactgagtgcttgcctt
gttgcggttgtttgttcttctgagcagccaccatttagacctcttggtagtccagctgga
gatggtgcctctgttattttgaagtgtcttcttgagaaggcaactaaactattaaatgat
ccccatacggcagccaactgtggtggacctaattttgctctctggcaggcatcatttgat
gaattttttgatcttcttaccaagtattgcctgattaaatatgatacaatactgcaatca
ctctatgcaaaggacccaactagcacagaaagtattgatgtagaagtacgtgcagctaca
aaatttgaaatgcctgtggaacttttacgggcgtgccttcctcatactaatgaacgccag
atggaacttttaagacattttgggcagcaacgcaatcccattaccggaagtggtctcata
aactcggaaactgtaaggagttaa
DBGET
integrated database retrieval system
