KEGG   Manihot esculenta (cassava): 110620319
Entry
110620319         CDS       T05761                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03030  DNA replication
mesc03410  Base excision repair
mesc03420  Nucleotide excision repair
mesc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110620319
   03410 Base excision repair
    110620319
   03420 Nucleotide excision repair
    110620319
   03430 Mismatch repair
    110620319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mesc03032]
    110620319
   03036 Chromosome and associated proteins [BR:mesc03036]
    110620319
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110620319
DNA replication proteins [BR:mesc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110620319
  DNA Replication Termination Factors
   ELG1-RFC complex
    110620319
Chromosome and associated proteins [BR:mesc03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110620319
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110620319
  Check point factors
   HRAD17(Rad24)-RFC complex
    110620319
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 AAA_22 DUF815 AAA_5 RsgA_GTPase RuvB_N Mg_chelatase AAA_29 AAA_23 ABC_tran AAA_16 T2SSE AAA_2 TsaE nSTAND3 RNA_helicase AAA_11 FtsK_SpoIIIE AAA_24
Other DBs
NCBI-GeneID: 110620319
NCBI-ProteinID: XP_021619700
LinkDB
Position
8:complement(38950826..38954503)
AA seq 354 aa
MLWVDKYRPKTLDQVMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG
SSAEKVKVENRTWKIYAGSRTIELELTTLSSTNHIELSPSDVGFQDRYVVQEIIKDMAKS
RPIDIKGRKGYKVLVLNEVDKLSREAQYSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
CLNVRINSPSEEQIVKVLEFIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQY
PFTSNQAIPPMDWEEYVSEIASDIMREQSPKKLFQIRGKLYELLINCIPPEIILKRLLYE
LLKKLDEELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKAFLIETFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtggacaagtacagacccaaaaccctagaccaggttatggtccacgaagac
attgcccaaaacctcaagaagctggtcactgaacaagactgcccccatttgctcttctat
ggcccctccggttctggcaagaaaaccctaatcatggcccttcttcgtcagattttcggt
tccagcgctgaaaaggtgaaggtggaaaatcggacatggaaaatttatgccggaagtaga
actattgaactggagcttactacattatcaagcacaaatcacatagagctgagtcctagt
gatgtaggcttccaggacagatatgttgtacaagagataatcaaagacatggctaaatct
cgtccaattgacataaaaggaagaaaaggttataaagttctagtgctcaatgaggttgat
aagctttcaagagaagcacaatattctctccgtagaactatggagaagtacagtgcctcc
tgccggctgattctgtgctgcaacagttcttcgaaggttactgaagcaattcggtctcgc
tgtctgaacgtgcgaataaattcaccttcagaggaacagattgttaaggtgttggagttc
attgggaagaaagaagggctgcaacttccacctggatttgctgctcgtatagcagaaaaa
tcaaatagaagtttaaggagagctatactttcatttgagacttgtcgagtccaacagtat
ccttttacgagtaatcaagcaatacccccaatggactgggaggaatatgtttctgaaata
gcatctgatataatgagggagcagagtcctaaaaagctttttcagattcgagggaagttg
tatgaactgcttattaactgtattcctccagagattattttgaagaggctgctttatgaa
ttgttaaagaaattggatgaggaattaaagcatgaggtctcccattgggctgcatattat
gagcataggatgcgtcttggacagaaagccatttttcatcttgaagcttttgtggccaag
ttcatgagcatttacaaggctttcctcattgaaacatttggttga

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