Manihot esculenta (cassava): 110620443
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Entry
110620443 CDS
T05761
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110620443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110620443
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110620443
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
110620443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
110620443
NCBI-ProteinID:
XP_021619868
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Position
8:complement(37847817..37850843)
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AA seq
210 aa
AA seq
DB search
MEEEKQTEEEIMQEEEEMVTPGEVLGKAAEVKPGKGAYLAPYRNTEILYVYSSLTGVRRT
LSPPADSTDQRPIVEVIGHKAHGAVPEPGCVVIARVTKVMAKMASADIMCVGPKSVREKF
TGIIRQQDVRATEIDKVDMHLCFRPGDIVRAQVLSLGDARAYYLSTAKNELGVVSAESTA
GATLVPISWTEMQCSLTGQIEQRKVAKVGS
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagagaagcagacagaggaagagataatgcaagaagaagaagagatggtaaca
ccaggagaggtgttagggaaagctgctgaagtgaaacctgggaaaggtgcgtacttggca
ccctatcgtaacactgaaatcctctacgtctactcctccttaacgggtgtccgccgcact
ctatcacctcccgccgactctaccgaccagaggccaattgtggaagtaattggacacaag
gctcatggtgctgttccagagcctggttgtgttgtcattgcccgagttactaaagtcatg
gctaaaatggcttcagctgacattatgtgtgttggtccgaagtctgtgcgagaaaagttt
actggcataattaggcaacaagatgtaagagcaactgagattgacaaagtggatatgcat
ttatgttttcgtcctggtgatattgtcagagctcaagtgttgtcccttggagatgcacgg
gcttattacctttctactgccaagaatgagttgggtgttgtatctgcagagagcacagca
ggtgcaacattggtgcccataagctggacagagatgcaatgttcattgactggccaaatc
gagcaaagaaaagttgctaaggttggaagctga
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