Manihot esculenta (cassava): 110620876
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Entry
110620876 CDS
T05761
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110620876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110620876
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110620876
mRNA degradation factors
5'-3' decay
Decapping complex
110620876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
DUF445
Motif
Other DBs
NCBI-GeneID:
110620876
NCBI-ProteinID:
XP_021620506
LinkDB
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Position
8:complement(176749..189036)
Genome browser
AA seq
1460 aa
AA seq
DB search
MASSGNPPNQGGGVFDVNKLFKPSSSPINMNIMQPSTPPQQQQQQQTQPPLSPSNSNPAI
GNLTTSPSFPLPSSLPSSSPPYLTPSSSYPPPSGPYHPYHPHYLSPYPPSPLPQLQQHHN
HFLTNMQQQNRPQLISSFPTAAATPVAAPSTAPSPPPFSPNNPTPSGVLVDILNQNQQQQ
QQPPPSNNLTMPFSSPSSSAVSNFNTPIPSAPPVSLVSSTHQLQQPNPTPVRMLSSKLPK
GRHLIGNHVVYDIDVRLQGEVQPQLEVTPITKYVSDPGLILGRQIAVNRNYICYGLKPGA
IRILNINTALRSLLRGHNQKVTDMVFFAEDVHLLASTCIDGRVFIRKINEGPDEEEKSQI
FERIVLALQIITEGESVHPRVCWHPHKQEILMVAIGNRILKIDTIKVGKGEGFSAEKPLN
CSIDKLIDGVQLVGKHEGEVTELSMCQWMTTRLASASVDGTVKVWEDRKAVPLAILRAHD
GNPVNSVAFLTAPHRPDHIVLITGGQLNQEVKIWASAIEEGWLLPSDAESWQCSQTLTLK
SSAESSVEDAFFNQVVALPRAGLFLLANAKKNAIYAIHIEYGPYPAATRMDYIAEFTVTM
PILSLTGTSDSLPNGEHIVQVYCVQTQAIQQYALDLSQCLPPPLENMELEKTASNVSRVF
DAAGSDGFTIVESSHGTKPVEIPIGKGSPIQPIISSSSESTPSASHPESLISAELNNLPD
NATSVVEAKASALPSHNSVGTINSVSSPHPLSPQLSRKMSGFQGPSNGTEPSMQLIDHVD
QPGLDYLVEHRMDSTKENMADTPSGDNLKKGEKNITQTDISEVPEPPVMFKHPTHLITPS
EILSRAASSSENSQISQGLSVGETKVQDVVLNNDMITVEEDVKVVGDTRTNQSFDSDFPR
ESPATVPEKKEKSFYSQASDLSIQMARECCVEAYSAGGIRQPGGSSVIEVPDRPPNRGED
EEQEIRKDIPAKVGQSETPAVVLQSPAPTTKGKKQKGKNSQLPGPCSPSASPFNSTDSFN
EPGCSSGAQSSDAALSQLSAMQDMLDQLLSTQKEMQKQMTMMISVPVSKEGKRLETSLGR
SIEKVVKANTDALWARFQEEYTKHEKLERDRMQQLSNLITNFVNKDLPSTLEKTLKKEVA
AVGPAVARVITPILEKSISSAITESFQKGVGEKAVNQLEKSVSSKLEGIVARQIQSQFQT
SGKQALQDALRSSLEAAIIPAFEMSCKSMFDQVDSTFQKGFIDHLNATQQQFDSTNSHLA
ISLRDAINSASSMAQTLSGELAECQRNLLAFAAAGANSKVGNPSLSNGPLAGLHEMAEAP
LDPRKELSRLIAERKFEEAFTTALHRSDVTIVSWLCSQVDMQGILSIAPLPLSQGVLLAL
LQQLACDISKETSRKLAWMTDVAVAINPADPMIAVHVRPIFDQVSQILSHQRNLPTTSAS
ESASIRLLMHVINSVLSSCK
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatctggtaatcctccaaatcaagggggtggtgtgtttgatgtgaataagctg
ttcaagccatcttcaagccctataaatatgaatattatgcaaccatcaaccccaccacaa
caacagcagcagcagcagactcagccccctttgagtcccagcaactccaacccagctatt
ggcaatctcacaacttctccttccttccctctcccttcctctcttccttcttcttctcct
ccctatttaactccatcttcttcttatcctcctccctctgggccgtaccacccttaccac
ccccactacctctctccttatccaccttctcctcttccacaactgcaacagcatcacaat
catttcctaactaatatgcaacagcagaatagacctcaactcatatcttcttttcctact
gctgctgctacccccgttgctgcaccttcaactgctccttctccccctccattctcgcct
aataacccaactcccagtggcgtattggtggatatcctcaatcaaaaccagcagcagcag
caacaacctcctccctccaacaatctgaccatgcccttctcttccccatcttcatcggct
gtatccaacttcaatactcccatcccttctgctccgcctgttagtttggtatcctcaact
catcaactgcagcagcccaacccaacgcccgtgaggatgctcagcagtaaactcccaaaa
ggccgccatttgattggcaaccatgttgtgtatgatattgatgtcaggttgcaaggcgag
gtgcagcctcaactcgaagttactcccatcaccaagtacgtctctgatcctggtcttata
cttggccgtcagattgctgtcaatagaaattatatttgctatggacttaagcctggagct
attcgtatcctcaatatcaacactgccttgagatccttgcttcgtggccataaccagaaa
gtaacagatatggtgttctttgctgaggatgttcaccttcttgcaagcacatgcattgat
gggcgggttttcatacggaagatcaatgaagggccagatgaggaagagaagtctcaaata
tttgaaaggattgttcttgctcttcagataataacagagggagaatcagtccatccacga
gtttgttggcatcctcacaaacaagaaattttgatggttgcaattggaaatcgaatccta
aaaattgataccattaaagtcggaaaaggtgaaggtttttcagcagagaaacctctcaat
tgttccattgataagctgattgatggggtccagcttgttggtaaacatgagggtgaagtt
actgagttgtcaatgtgtcaatggatgacgacccgtttggcttcagcttcagtagatggc
acggtcaaggtttgggaagatcgtaaagcagtgccacttgcaatattgagggcacatgat
ggtaaccctgtaaattctgtggcatttctgactgctcctcaccgacctgatcatattgta
cttatcactgggggccaactaaatcaggaagtgaagatttgggcctctgcaattgaggag
ggctggctgttgcctagtgatgctgaatcatggcagtgtagtcagactttgaccttaaag
agttctgctgaatctagtgttgaggatgcattctttaatcaagttgtagcactgcctcgt
gctggcttatttctgttggcaaatgccaagaagaatgctatttatgcaatacacatagaa
tatggaccttatccagctgcgacccgtatggattacatagctgagtttacagtgacaatg
cctattttgagtctaaccggtactagtgatagtttacctaatggagaacatattgttcag
gtttactgtgtccaaacacaggctattcagcagtatgcattggatttgtcacagtgccta
ccaccgcctttggagaacatggagttggagaaaacagcatccaatgtttctcgtgttttt
gatgctgctggttctgatggtttcactatcgtggaatcatctcatggaactaaaccagtt
gaaattcctataggtaaagggtctcccatccaacctattatttcaagcagttctgaaagc
actccctcagcaagccatcctgaaagcctgatttctgctgagcttaacaacttaccagat
aatgctacttcagttgtagaagccaaggctagtgctttgccatcgcataatagtgttgga
actatcaacagtgtgtcttctccacatccattgagtccacagttatctcgaaaaatgtcc
ggtttccaaggtccatcaaatggcacagagcctagtatgcaacttattgatcatgtggac
cagcctggccttgattatttggttgagcacagaatggattctacaaaggaaaacatggct
gatactccttctggtgataatttgaagaagggtgagaaaaacattacacaaactgatatc
tccgaggttcctgaacctcctgtaatgtttaaacacccaacccaccttataactccatca
gaaatactatccagagctgcctcgtcctctgagaattctcaaattagtcagggactgagt
gtgggagagacaaaggtccaggatgtggtcctcaataatgatatgataactgtggaggaa
gatgttaaagttgttggagacacaagaactaatcaaagttttgactctgactttccaaga
gaatcccctgccactgtaccagagaaaaaggaaaaatcattctactctcaggcctcagat
cttagtattcagatggctagagaatgttgtgtggaagcttacagcgctggaggaattcgg
cagcctggtggaagcagtgtcatagaagtaccagatagacctcctaacagaggtgaagat
gaagaacaagaaataagaaaagatatacctgcaaaggttggtcaatcagaaactcctgcg
gtagtcctacaatccccagccccaacaacaaaaggaaaaaaacagaaggggaaaaactct
caattacctggtccatgttctccttccgcaagtcctttcaactcaacagattcgttcaat
gaaccaggttgcagttctggtgcccaatctagtgatgctgctttatcccaattatctgcc
atgcaggatatgcttgatcagttactaagcacgcagaaagaaatgcagaagcagatgact
atgatgatttctgtcccagtttccaaagaaggtaaaagactggagacatccttgggccga
agtattgagaaagttgttaaggctaatactgatgctctatgggctcgtttccaagaagaa
tacacaaagcatgagaagttagagcgagatcggatgcagcagttgtctaatttgattacg
aattttgtgaacaaggatttacctagcactttagagaaaactttaaagaaggaggtagct
gcagttggacctgctgtagctcgtgtaattactcccatactggagaaaagcatatcatca
gcaattacagagtcattccagaaaggggtgggagaaaaagctgtgaatcaactagagaaa
tcagttagctcaaaacttgaaggcatagtagccaggcaaatccaatcacaatttcaaact
tctggcaagcaagctcttcaggatgcactaagatctagtttggaagctgcaattattcct
gcatttgagatgtcatgcaaatctatgtttgatcaagttgattcgacatttcagaaaggg
ttcattgatcatctaaatgccactcaacaacagtttgactccacaaattctcacttggct
atatctcttagggatgctatcaattcagcatcatcaatggctcagaccctgagtggagaa
ttagctgagtgccaacgcaatctcttagcttttgcagctgcaggtgcgaactccaaagta
ggaaatccctctttgagtaatggaccactggctggtttacatgagatggctgaggctcct
ctggatccaagaaaagaattatccagattgatagctgagcgcaaatttgaggaagcattc
acaacagcgctgcatagaagtgatgtcactatagtttcctggctatgttctcaggttgat
atgcaagggattttgtccattgcaccactacccttgagccaaggagttctgctggccctt
ttacagcaattggcctgcgatatcagtaaggaaacttcaagaaagctggcatggatgaca
gacgtggctgttgctataaaccctgcagatccaatgattgcagtgcacgtgagaccaata
tttgatcaggtctctcagatactgagccatcagagaaatctaccgactacatctgcttca
gaatctgccagtatacgtcttcttatgcatgtcataaactctgtgctaagcagctgtaaa
tga
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