Manihot esculenta (cassava): 110621107
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Entry
110621107 CDS
T05761
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110621107
03036 Chromosome and associated proteins [BR:
mesc03036
]
110621107
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110621107
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
110621107
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_3
HHH_9
OB_PDCD11
Tex_N
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
110621107
NCBI-ProteinID:
XP_021620863
LinkDB
All DBs
Position
8:complement(39766359..39775594)
Genome browser
AA seq
1608 aa
AA seq
DB search
MGKNIVSDEEDEVEFEGYDREPVHADAVEDPEDEDEEDEEGQDEYEKDDFIVDDVEEEEE
VDEEEERADSDEERHKKKKKKKKRESEDVLDEDDYELLRDNNAFHHRPKDSKKFKRLKKA
QRDSDEERFGFSDEEFDGSGKGGRTAEEKLKRTLFGDDEGVPLEDIAEEEQEEEEEEDGD
IGEEDEMADFIVDEEVDENGAPMRRTKLKRKKSRQAPGVTSSAIQEAQELFGDVDDFLLR
RKRELESSEWKETRLDKEFEPTVLSEKYMTEKDELIRMSDIPERMQISEESTGPPPTDEI
SITEEGSWIYNQLANGTVPLFRKRRDEAHEEEQDLPLSRDDIIRFLELHHVQKLDVPFIA
MYRKEECSSLLKDPENLEVDDENHDKSDRTPMLKWHKVLWAIQDLDRKWLLLQKRKTALH
SYYNRRFEEESRRIYDETRLNLNQQLFVSILKSLKDAESEREVDDVDAKFNLHFPPGEVG
VDEGQYKRPKRKSQYSICSKAGLWEVASKFGCSAEQLGMGLSLEKMGEILENAKETPEEM
ASNFTCAMFETPQAVLKGARHMAAVEISCEPSIRKYVRSMYMENAVVSTSPTPDGNVAID
SFHQFAGVKWLREKPVNKFEDAQWFLIQKAEEEKLLQITFKLPEKYMNKLIGDCNEHYLS
DGVSKSAQLWNEQRTLILKDALYTYLLPSMEKEARSLLTSRAKNWLLLEYGKVLWNKVSV
GPYQRKENDVSSDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYAGSLTLRSQNVN
DQQHKKNDQQRVLKFMTDHQPHVVVLGAVNLSCTKLKDDIYEIIFKMVEENPRDVGHEMD
ELSIVYGDESLPRLYENSRISSDQLPGQPGIVRRAAALGRYLQNPLAMVATLCGPSREIL
SWKLSPLENFLNPDEKYAMVEQVMVDVTNQVGLDINMATSHEWLFAPLQFISGLGPRKAA
SLQRSLVRAGAIFTRKDFVTVHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIH
PESYGLAQEMAKDVYEMDNGEANDDDEALEMAIEHVRDRPNLLKTLDLDVYLRDKKRENK
KETFKYIQLELIQGFQDWRRQYKEPSQDEEFYMISGETEDTLAEGRIVQATVRRVQGGRA
ICVLESGLTGMLTKEDYADDWRDMPELSDRLHEGDILTCKIKSIQKNRYQVFLVCREREM
RSNRYQQVRDLDPYYHEDRSSLQSEQEKAQKEKELAKKHFKPRMIVHPRFQNITADEAMG
FLSDKDPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKEHKDITSLLRIGKTLKI
GEDTFEDLDEVMDRYVDPLVTHLKAMLSYRKFRRGTKAEVDEQLKIEKSDYPMRIVYSFG
ISHEHPGTFILTYIRSKNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPMNESA
PSIRSVAAMVPMRSPATGGSSGASVGSGWGGSANDGGWRGQSFDRDRSSAPGSRTGRSRD
GHQSGLPRPYSGHGRGSHNSRGNNSSSDRQDSGYDNSRWDSGAKDGDRSWGSFPGAKVQN
SPGREAFPGGWGTGGSDNGSSGWGTGSKRGSSQSQGDNAWSGGGSGGW
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaacatagtctccgatgaagaagatgaggtcgagttcgaaggctatgacagg
gaacctgtccatgctgatgcagtagaagaccctgaagatgaagatgaggaggatgaagaa
gggcaggatgaatacgagaaggatgattttatagtagacgatgttgaggaggaagaagaa
gtagatgaagaagaagagagggcagacagtgatgaagaaaggcacaagaagaagaagaaa
aagaaaaaaagagaatctgaggatgtccttgatgaagatgattatgagctccttcgagac
aacaatgctttccatcacagaccaaaggatagcaaaaaatttaagcggttgaaaaaagct
cagagggattctgatgaggagcgctttgggttttctgatgaggagtttgacggaagtggt
aaaggtgggcgaacagctgaagagaaacttaagcgcacattatttggtgacgatgaagga
gttcccctcgaggatattgctgaagaggagcaggaggaagaagaggaagaggatggggac
attggcgaggaggatgaaatggcagattttattgtggacgaagaagttgatgaaaatgga
gctccaatgagacgaacgaagctgaagagaaagaaatccaggcaagcaccaggagttaca
tcatctgctatacaggaagctcaggaactatttggtgatgttgatgacttcctgcttcga
cgcaagcgagagctagaatctagtgaatggaaggaaaccagattggataaggaatttgag
cctactgtactttctgagaagtatatgactgagaaagatgagctgattcgaatgagtgat
attccagaaagaatgcagatatctgaggaaagcactggtcctcctccaactgatgaaatc
agtataacagaagagggaagctggatatataatcaacttgcaaatggtacggtgcctttg
tttcgcaagagaagagatgaggcacatgaagaagagcaggatttgcccttaagcagggat
gacatcatccgatttttggaattgcaccatgttcagaagctagatgtccccttcattgct
atgtatagaaaggaggagtgttctagcctattgaaagatcctgagaaccttgaagttgat
gatgagaatcatgataaatctgacagaacacctatgctgaagtggcacaaggtgctttgg
gcaattcaggacttggatagaaagtggttacttcttcaaaaacgaaagactgctctccat
tcatactataataggcgatttgaagaagaatctcgacggatatatgatgagacaagactg
aatttaaatcagcagctttttgtttcaattcttaagtcgctcaaggatgcagaatcggag
agggaggttgatgatgtcgatgcaaagttcaacttgcatttccctccaggcgaggtaggc
gtggatgaaggacagtataagaggcccaaaaggaaatcccaatatagtatctgcagtaag
gctggactctgggaagttgcaagcaagtttgggtgcagtgctgagcaactcggaatgggt
ttgtccctagaaaagatgggagaaatattggagaatgctaaggaaacacctgaggagatg
gcatcaaactttacatgtgcaatgttcgaaactccccaagcagttcttaaaggggccagg
cacatggctgcagttgagataagttgtgagccaagtatcagaaaatatgtgcgtagtatg
tatatggaaaatgccgtggtatccacaagtccaacgccagatggaaatgttgcaatagat
tcttttcatcaatttgcgggtgtgaagtggttgcgtgaaaaaccagttaacaaatttgag
gatgcccaatggtttctcattcaaaaggctgaggaggagaaacttcttcaaataacattt
aagcttccagaaaaatacatgaataaattgattggtgactgtaatgagcattatcttagt
gatggtgttagtaaatctgctcaactatggaatgagcagaggacattgatattgaaggat
gctctgtatacttacttgttgccttcaatggagaaagaagcaagatccttattaaccagt
agagctaaaaattggttgcttttggaatatggaaaggttttatggaataaagtttccgtg
ggtccatatcaacggaaagaaaatgatgtttcctctgatgatgaagctgctccaagggtc
atggcctgctgctggggccctgggaagccagctaccacttttgtgatgttggattcatca
ggggaggtgctagatgtactttatgctgggtccctcactttgcgatctcaaaacgtcaat
gaccagcaacataaaaaaaatgaccagcagcgtgttttgaagttcatgactgatcaccaa
ccacatgtggttgttctaggagctgtgaatttgtcttgtactaagctgaaggatgatata
tatgagatcatttttaagatggtggaggaaaatcctagagatgtgggacatgagatggat
gaattaagcattgtgtatggtgatgagtctctgcctcgcctttatgaaaattctcggata
tcttctgaccagctacctgggcagccaggcattgttaggcgggctgcagctcttggtcgg
tatctgcaaaatccactggccatggttgcaacactctgtggaccatcaagggagattttg
tcctggaagctcagccctttggagaattttctcaaccctgatgagaaatatgcaatggtt
gaacaggttatggtagatgtcacaaaccaggtgggccttgatattaacatggctacaagc
catgaatggttatttgcccctttacagttcatttctgggcttggccctagaaaggcagca
tctttgcagaggtctctagtaagggctggagcaattttcactagaaaagactttgtgaca
gtccatggacttggtaagaaggtgtttgttaatgcagttggcttcttgcgtgtccgacgt
agtgggttagctgcaagcagcagccaatttattgatttgttggatgatacaaggatacat
ccagaatcttatggactggcacaggaaatggctaaggatgtttatgaaatggacaatggt
gaggcaaatgatgatgacgaggcattggaaatggcaattgagcatgttagagaccggccg
aatttattgaaaactcttgatcttgatgtgtatctccgtgataagaagcgtgaaaataag
aaggagactttcaaatatatacaattagaattgatacagggttttcaggattggcgtaga
cagtataaagagccaagtcaggatgaggaattctatatgatatcaggtgaaactgaggat
actcttgctgaagggagaatagtacaggctactgttcgcagggtgcaaggtggaagggca
atatgtgtactggaatctggacttactggtatgcttacaaaggaagactatgctgatgat
tggagggatatgcccgagttgtctgacaggctgcatgaaggtgacatactcacctgcaag
atcaaatcgatccaaaagaataggtatcaggtgtttttagtttgtagggagagagagatg
aggagtaaccgatatcagcaggtccgagaccttgatccatattaccatgaagatcgaagt
agtcttcagagtgagcaagaaaaggctcagaaagagaaggagcttgctaagaaacacttt
aagcctagaatgattgttcatcctcgcttccagaacataaccgctgatgaagcaatgggg
tttttatccgataaggatcctggagaaagcatcattcgtcctagttctcgtgggccatcg
tatttaactctaactcttaaagtttatgatggagtttatgctcacaaggacatagttgaa
ggtggaaaggaacataaggacattacaagtctacttcgaattgggaagacactgaaaatt
ggggaggacacttttgaggatttggatgaggtaatggaccggtatgttgatcccttagta
actcatctaaaggcaatgcttagttaccgcaagttcagaagggggactaaagcagaagtt
gacgagcaactcaagattgagaaatcggattatcctatgaggatagtttactcttttggg
atttcacatgaacatccaggcacttttattctgacttacattaggagcaaaaatccacat
catgagtatgttggtctatatcccaagggattcaagtttcggaagaggatgtttgaggac
attgatcggctggtggcatattttcagaggcacattgatgatcctatgaatgaatcagca
ccgtcaattagatcagttgctgccatggtaccaatgcgaagccctgcaactgggggctct
tcaggggcatccgtgggtagcggatggggtggttctgcaaatgatggtggctggagaggc
cagtcttttgacagagatcgttcttctgcgccaggctccaggacagggaggagtcgagat
ggtcatcagagtggtttaccaaggccatacagtggacatggtcgtggctcccataacagc
agaggcaataacagtagcagtgacaggcaggactctggttatgataactccagatgggat
tcaggtgccaaggatggtgatagaagttggggcagtttccctggtgctaaggtccagaat
tcacctggaagggaggctttccctggtggctggggaactggtggctctgacaatggaagt
tctgggtggggtactggttccaagagaggttcttcgcagtcacagggtgataatgcatgg
tctggaggtggaagtggcggttggtga
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integrated database retrieval system
