Manihot esculenta (cassava): 110621143
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Entry
110621143 CDS
T05761
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mesc01009
]
110621143
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110621143
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
110621143
Protein phosphatases and associated proteins [BR:
mesc01009
]
HAD phosphatases
Fcp/Scp phosphatases
110621143
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
110621143
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
PTCB-BRCT
BRCT
BRCT_2
RAG1_imp_bd
Motif
Other DBs
NCBI-GeneID:
110621143
NCBI-ProteinID:
XP_021620935
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Position
8:complement(10596136..10615291)
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AA seq
469 aa
AA seq
DB search
MSLATDSPVHSSSSGDFAAFLDAELDSISSDSSPNEEEVNDEFNSDSSDSSPNEEAENDS
EIESQRIKRCRVETVENIEDPKGSTSHGSLEQNLEVSSSKDACTHPGSFGDMCILCGQML
NEETGGVTFGYIHKGLRLGNDEIVRLRRTDMKNLLRQKKLYLVLDLDHTLLNSTRLMHIT
LEEEYLYSQIDSLQDVSKGSLFKLDFLQMMTRLRPFVRMFLKEASQMFEMYIYTMGDRAY
AMEMAKLLDPRREYFDARVISRDDGTQRHQKGLDIVLGQENAVLILDDTETAWTKHKGNL
ILMERYHFFASSCHQFGFNCKSLSELKSDESDRDGALASVLKVLRKIHHMFFDELVDNLD
DRDVRQVLKIVRKDVLKGCKIVFTRVFPTQFQADNHHLWKMAEQLGATCSRDLDTSVTHV
VSQDAGTEKSRWALKNKKFLVHPRWIEAANYLWQRQPEENFPVNQPKNH
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgcaactgattctccagtacactcgtccagtagtggcgattttgcagctttt
cttgatgcagagttggattctatatcttcagactcatcaccaaatgaagaagaagttaat
gatgaattcaattctgattcatcagactcatcaccaaatgaagaagctgagaatgattct
gaaattgagagccagaggataaaaaggtgtagagtggagacagtggagaacatagaggat
cctaaaggatcaacttctcatggttccctagagcagaacttagaagtgtcctcaagtaag
gatgcctgcacacatccaggatcttttggagacatgtgcatactctgtgggcaaatgttg
aatgaggaaactggtggtgtaacatttggatacatacataaggggttaaggcttggtaac
gatgaaattgtgcggttacgtagaacagatatgaagaatttgttacgccagaaaaagctt
tacttggttcttgatttagaccatacgttgcttaattctactcggcttatgcatataaca
ttagaagaggaatatctatatagtcaaatagattctttgcaagatgtttcaaaaggtagc
ctcttcaagttggacttcttgcaaatgatgaccagattaaggccctttgtacgtatgttt
ctcaaggaagcaagtcaaatgtttgagatgtacatatacacaatgggtgatagagcatat
gcaatggaaatggcaaagctgcttgatcctagaagagagtactttgatgctagagttatt
tcacgtgatgatggaactcagagacatcaaaaaggtcttgatattgtgctggggcaagaa
aatgctgttctgatcctcgatgatacagaaactgcatggacaaagcataaaggcaatttg
atattaatggaaagatatcactttttcgcttcaagttgtcatcaatttggcttcaattgt
aaatctctttctgagctaaagagtgatgagagtgacagggatggagcgcttgcatctgtt
cttaaagttctaaggaaaattcaccatatgttctttgatgagctggtggacaatcttgat
gacagagacgtgagacaggttttgaaaattgttcggaaggatgtgctgaagggatgtaaa
attgtcttcactcgagtatttcccacccaattccaggctgataatcatcatctctggaag
atggctgagcagttgggagccacatgctccagggaccttgacacatcagttacacatgtg
gtctcccaggatgctgggactgagaagtctcgttgggctctgaagaacaagaagtttttg
gtccatccacgttggatagaggctgcaaactatctgtggcaaaggcagcctgaagagaat
ttccctgtcaaccaaccaaaaaatcattag
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