Manihot esculenta (cassava): 110621193
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Entry
110621193 CDS
T05761
Name
(RefSeq) uncharacterized protein LOC110621193
KO
K14315
nucleoporin NDC1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110621193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110621193
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110621193
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
PSI_integrin
DUF6404
Motif
Other DBs
NCBI-GeneID:
110621193
NCBI-ProteinID:
XP_021621040
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Position
3:complement(20195647..20203089)
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AA seq
542 aa
AA seq
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MSSPSPPPPEVVVKNRFLGFLIWQSISSSAIFILFKTLLLSPLTNTNLALPSFLSLFAFL
IFHLAQLFFSASLSLLSSPQPYSLESPLQLVFPLLRFLFVSSDSLSSSDFRRRVNLYLSF
FLFLGAASISGFLSVICVCGWANHGYDGVQLIEKVGFRGFAFGLLYACFYIYKRRWVLEF
PIVQRPPFFSIKMRLPVAIKQALKISSAAYLFSTVLLVFLPNQFNSYVTMKKFITEQIIL
YTGSLSVFLCWELNHHLHQVLQTKRFVFAPPKGSAAAETNPSEPLLAALEESSPGSLPQF
LAYLDLCMVSENNVDTWRRAAFFEETGETYKRVVVVCMRPLEQLASTLGEDLETHPVDKA
YQQSNQLQSQTNSLQDPKCNKPLNNFQQCAWCARTVAALTARSHKEDRCGVAQLSGSNAA
VISTLLSCLLAVEAVMGKKTNVQTPNHLMGPGGIKWATLNTGRRDVVVAKKRSGPMHSKA
YDMADVLKTSIYGIISAFHDEMLTSDKAGLLERDWLISGKPLFGTRELLLQKLRLFLDFR
AS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaccgtcgccacctccgcccgaagtggtggtcaagaatcgatttttagggttt
cttatatggcaatccattagctcttccgccatcttcatcctcttcaaaaccttgcttctc
tcgcctcttaccaacactaatttagcactaccatcattcctctccctttttgctttctta
atttttcaccttgcacagctcttcttctctgcttcactctctctactctcatctcctcag
ccctattcccttgagtcgccactgcagctcgtcttccccctcctccgtttcctttttgta
tcaagtgactccttgtcgtccagtgatttccgccgccgggttaatctctatcttagtttc
tttttgtttttgggggcggcttccatctcgggatttctctccgtgatatgcgtgtgcggc
tgggccaaccatgggtatgatggagtacagctgattgaaaaagttgggttcagaggtttt
gcttttggattgctctatgcctgcttttatatttataaacggagatgggttttggagttt
cccattgttcagcggccccctttcttcagcatcaaaatgaggcttcctgtggccattaaa
caagctttaaagatctcaagtgcagcttacctattttcgacagtgctgcttgtgtttctt
ccaaatcagtttaatagttatgtgacaatgaaaaagtttatcactgagcagatcatcctg
tacactgggagcctttctgtgttcctctgttgggaattaaatcatcatttacatcaggtg
ctacaaacgaaaagatttgtatttgcgcccccaaaaggatcagcagcagcagaaacaaat
cccagtgagcctctcctagcagctttggaggagagcagcccaggttcccttccccagttt
cttgcatatcttgatctctgtatggtttctgaaaataatgtcgatacttggcggcgagct
gcattttttgaagaaactggtgagacttacaaaagagttgttgttgtatgcatgaggccg
ctggagcagcttgcttctactttgggtgaagaccttgaaactcatcctgttgataaggct
taccaacaatccaaccaattgcagtcgcaaactaattcgctacaagatcctaaatgcaac
aagcccctgaacaactttcagcaatgtgcatggtgtgccaggacagttgctgccttaact
gcacgctcacacaaggaagataggtgtggggttgctcaactgtctggtagtaatgctgct
gttatctcgacacttttatcttgcctgcttgctgttgaagcggtcatggggaagaagaca
aatgtgcagactccaaatcatttgatggggccagggggtattaaatgggctactctaaac
acaggaagacgagatgttgtggtagctaaaaagagaagtggccccatgcattcaaaggca
tatgacatggctgatgtgctgaagacctcaatttatggtattatatctgctttccatgat
gaaatgctcactagtgacaaagcaggccttcttgaaagggattggcttattagtggcaag
ccactttttggaacccgtgagctgcttctgcagaaattgcgtcttttcctggattttaga
gctagctag
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