KEGG   Manihot esculenta (cassava): 110621254
Entry
110621254         CDS       T05761                                 
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc04120  Ubiquitin mediated proteolysis
mesc04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    110621254
   04120 Ubiquitin mediated proteolysis
    110621254
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mesc04121]
    110621254
Enzymes [BR:mesc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110621254
Ubiquitin system [BR:mesc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    110621254
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4_3 zf-ANAPC11 FlxA zf-RING_16 zf-RING_5 zf-RING_11 Prok-RING_4
Other DBs
NCBI-GeneID: 110621254
NCBI-ProteinID: XP_021621146
LinkDB
Position
8:39794444..39800334
AA seq 539 aa
MMRLRTYASLSLVATIAVIYHAFNSRGQFYPAMVYLSTSKINLVLLLNMGLVIMCMLWQL
TKSIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPTLSHIRIVSFLGFLLLLDSLFLYSSVKFLIETRQASVSLFFSFEYM
ILATTTISTFVKYIFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDQFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVEPSESGVQHGSQSDTRRQGTGSTTTGP
QGSVSSVPDDNLGEHQARLQEAAAAAAAVYEKSFVYPSANTLVWSPGYVFLPQAQRPLAD
AANGESNRGQSQRESAFHGPSNLSMPQFPHVFVPFQVPGANANSGDMLGSIPSSELEAQK
KLIQHQIEVLQRQLQLLHQPKGEDRLHMDPTPSSESKGKTVVSSSSTPSDFSHHGESDL
NT seq 1620 nt   +upstreamnt  +downstreamnt
atgatgcggttgcgtacatatgcgagccttagtttggttgctaccatagcagttatttat
catgcgttcaacagtagaggccagttttatccagctatggtttacttgtcgacctctaag
atcaatttggtgctgcttctcaacatgggtctagttattatgtgcatgttgtggcaattg
actaaaagtattttccttggttccctccgagaagctgaagttgaaagattgaatgagcag
tcatggagagaagttatggaaatcctctttgctatcactattttcaggcaggacttctca
gtgacatttcttgctatggtcactgctttgttgttaatcaaggcattacattggttagct
caaaagagggttgagtacattgagacaaccccatcagtgccgacattgtctcacatccgg
atagtgtcatttctggggtttcttcttcttttagacagtctgtttttgtacagttccgtt
aagtttttgatagaaactcgccaggcatctgtttctctcttcttctcctttgagtatatg
atactagcaacaacaacgatctctacttttgtaaaatatattttctatgtgagcgacatg
ctaatggaaggacaatgggaaaaaaaggctgtctacaccttctatttggaacttattcga
gatttgcttcacttgtcaatgtacctctgcttcttccttgtgattttcatgaactatggt
gtacctttgcacttaataagggagctttatgagacattcaggaacttcaaaattcgtgtt
gctgattacattcgttaccggaagatcacttccaatatgaatgatcagtttccagatgcc
acacctgaagagctcaatgcaagtgatgccacctgtattatttgtcgtgaagaaatgacc
acagccaaaaaattaatctgtgggcatctgtttcatgttcattgtcttcgttcatggttg
gagaggcaacatacttgtcctacatgcagagccctagttgaaccatctgagagtggagtg
caacatggatcacaatcagatacacgtcggcaggggactggcagcacaactacaggaccg
cagggctcagtcagcagtgtgccagatgataatttgggcgagcatcaggctagactccaa
gaagcagcagcagctgctgctgctgtatatgagaaatcttttgtttacccttctgctaac
acgcttgtgtggtctcctgggtacgtctttctccctcaagctcaaaggcctttggctgat
gctgctaatggagagtcaaacagaggacaatcacagcgggagtctgcattccatgggcct
tcaaacttgtccatgccgcaatttccccatgtctttgtaccctttcaggtacctggtgcc
aatgcaaattctggagatatgttgggcagtataccaagctccgagttggaagctcagaaa
aagctaattcaacaccagattgaggtcctgcaaaggcagcttcaacttctacatcagcca
aaaggtgaggataggttgcatatggatccaacaccatcatcagaaagcaaaggcaagaca
gtcgtatcatcatcttcaaccccatcagactttagtcatcatggagagagtgatctgtag

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