Manihot esculenta (cassava): 110621254
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Entry
110621254 CDS
T05761
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04120
Ubiquitin mediated proteolysis
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110621254
04120 Ubiquitin mediated proteolysis
110621254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110621254
Enzymes [BR:
mesc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110621254
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110621254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_5
zf-RING_11
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
110621254
NCBI-ProteinID:
XP_021621146
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All DBs
Position
8:39794444..39800334
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AA seq
539 aa
AA seq
DB search
MMRLRTYASLSLVATIAVIYHAFNSRGQFYPAMVYLSTSKINLVLLLNMGLVIMCMLWQL
TKSIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPTLSHIRIVSFLGFLLLLDSLFLYSSVKFLIETRQASVSLFFSFEYM
ILATTTISTFVKYIFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDQFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVEPSESGVQHGSQSDTRRQGTGSTTTGP
QGSVSSVPDDNLGEHQARLQEAAAAAAAVYEKSFVYPSANTLVWSPGYVFLPQAQRPLAD
AANGESNRGQSQRESAFHGPSNLSMPQFPHVFVPFQVPGANANSGDMLGSIPSSELEAQK
KLIQHQIEVLQRQLQLLHQPKGEDRLHMDPTPSSESKGKTVVSSSSTPSDFSHHGESDL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatgcggttgcgtacatatgcgagccttagtttggttgctaccatagcagttatttat
catgcgttcaacagtagaggccagttttatccagctatggtttacttgtcgacctctaag
atcaatttggtgctgcttctcaacatgggtctagttattatgtgcatgttgtggcaattg
actaaaagtattttccttggttccctccgagaagctgaagttgaaagattgaatgagcag
tcatggagagaagttatggaaatcctctttgctatcactattttcaggcaggacttctca
gtgacatttcttgctatggtcactgctttgttgttaatcaaggcattacattggttagct
caaaagagggttgagtacattgagacaaccccatcagtgccgacattgtctcacatccgg
atagtgtcatttctggggtttcttcttcttttagacagtctgtttttgtacagttccgtt
aagtttttgatagaaactcgccaggcatctgtttctctcttcttctcctttgagtatatg
atactagcaacaacaacgatctctacttttgtaaaatatattttctatgtgagcgacatg
ctaatggaaggacaatgggaaaaaaaggctgtctacaccttctatttggaacttattcga
gatttgcttcacttgtcaatgtacctctgcttcttccttgtgattttcatgaactatggt
gtacctttgcacttaataagggagctttatgagacattcaggaacttcaaaattcgtgtt
gctgattacattcgttaccggaagatcacttccaatatgaatgatcagtttccagatgcc
acacctgaagagctcaatgcaagtgatgccacctgtattatttgtcgtgaagaaatgacc
acagccaaaaaattaatctgtgggcatctgtttcatgttcattgtcttcgttcatggttg
gagaggcaacatacttgtcctacatgcagagccctagttgaaccatctgagagtggagtg
caacatggatcacaatcagatacacgtcggcaggggactggcagcacaactacaggaccg
cagggctcagtcagcagtgtgccagatgataatttgggcgagcatcaggctagactccaa
gaagcagcagcagctgctgctgctgtatatgagaaatcttttgtttacccttctgctaac
acgcttgtgtggtctcctgggtacgtctttctccctcaagctcaaaggcctttggctgat
gctgctaatggagagtcaaacagaggacaatcacagcgggagtctgcattccatgggcct
tcaaacttgtccatgccgcaatttccccatgtctttgtaccctttcaggtacctggtgcc
aatgcaaattctggagatatgttgggcagtataccaagctccgagttggaagctcagaaa
aagctaattcaacaccagattgaggtcctgcaaaggcagcttcaacttctacatcagcca
aaaggtgaggataggttgcatatggatccaacaccatcatcagaaagcaaaggcaagaca
gtcgtatcatcatcttcaaccccatcagactttagtcatcatggagagagtgatctgtag
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