KEGG   Manihot esculenta (cassava): 110621918
Entry
110621918         CDS       T05761                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03020  RNA polymerase
mesc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110621918
  09124 Replication and repair
   03420 Nucleotide excision repair
    110621918
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110621918
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110621918
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     110621918
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      110621918
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 110621918
NCBI-ProteinID: XP_021621906
LinkDB
Position
9:complement(22454008..22461553)
AA seq 221 aa
MEKGGKGFSLPSKGLKSSLKSTPAKDGKDDSSAKSKRGRKVQFNSEGDKLDFLSKSGGNF
DATAVKGSLSKGGKGDKTSNGVKAPSTKEPQPLELKVEQELPKNVKCLMDCEAAQILLGI
QEQMVLLSRDPTIKLPVSFDKALNYAKTGARYTNPQSVRRVVESLKKHGVTDGEICVIAN
VCPETVDEVFALVPSLKSKKNMLREPIKDVVDELAKLKQQT
NT seq 666 nt   +upstreamnt  +downstreamnt
atggagaagggaggaaaagggttttcacttcccagtaaaggactaaaatcttcactcaag
tccactcctgctaaggatgggaaggatgacagctctgcaaagtcaaagaggggaaggaaa
gttcaattcaattctgaaggtgacaagcttgatttcttatcaaaatctggtgggaatttt
gatgccacagctgtgaaaggtagtttgagcaaggggggtaaaggagacaagacttcgaac
ggtgtgaaggctccttcgactaaagaacctcaaccacttgagctgaaagtcgagcaggaa
cttcctaagaatgtcaaatgtctgatggactgtgaggctgcacaaatcttattaggaatc
caggagcagatggttctactgtctcgagatcccacaatcaaacttcctgtctcatttgac
aaggccttgaattacgcaaaaaccggtgcccgttatacaaatccccaatctgttagaaga
gttgttgaaagcctcaaaaagcatggtgtcactgatggggagatatgtgtgattgctaat
gtttgtcctgagaccgttgatgaagtttttgcactagtcccatccttgaagtcaaagaaa
aacatgcttagagagcctatcaaagatgttgttgatgagctagctaagctgaaacagcag
acatga

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