Manihot esculenta (cassava): 110621937
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Entry
110621937 CDS
T05761
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110621937
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mesc02000
]
110621937
Transporters [BR:
mesc02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110621937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
110621937
NCBI-ProteinID:
XP_021621932
LinkDB
All DBs
Position
9:complement(4163799..4214264)
Genome browser
AA seq
1877 aa
AA seq
DB search
MGTRRRQLKAMLRKNWLLKIRHPFVTAAEILLPTVVMLLLIAVRTRVDTRIHPAQPYIRE
NMFVEVGKGISPNFQQVLELLLAEGEHLAFAPDTEETRMMIHFLSMKFPLIKEVSRVYKD
EDELETYICSDLYGAYNGVKNYSNPKIKGAVIFHDQGPQLFDYSIRLNHTWAFSGFPDVK
TIMDVNGPYLNDLELGVSPIPTMQYSFSGFFTLQQVVDSFIIFSAQQTVTNTANGHIELP
SSNSSSSFLKVPWTQMSPSKIRIAPFPTREYTDDEFQTIVKNVMGVLYLLGFLYPISRLI
SYLVFEKEQKIREGLYMMGLKDGIFHLSWFITYALQFAISSGIITACTMNNLFQHSDKSV
VFVYFFSFGLGAIMLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDQAVPMILKVLA
SLLSPTAFALGSINFADYERAHVGLRWSNIWRGSSGVNFLVCLLMMWLDMLLYCAFGLYL
DKVLPRENGVRYPWNFLFKNCFWRKKSMEAKHNGRISKLGNDTVESAVEAINLDMKQQEL
DNRCLQIRNLHKVYATKGGSCAAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPP
TSGDALVFGKNILTDMDEIRNGLGVCPQHDILFPELTVREHLEMFATLKGVKQEILETSV
TDMVDDVGLADKVNTVVRALSGGMKRKLSLGIALIGDSKVIVLDEPTSGMDPYSMRLTWQ
LIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHQYGVGYTLTLVKS
APTASAAADIVYRHIPSAICVSEVGTEISFKLPLASSLSFESMFRQIESCLRISVSNSEI
SSNEDKKYLGIESYGISVTTLEEVFLRVAGCDYDGNDGFKQRSNILSSDSVVPTASHNDG
SERVFDSKLLGNYRKFLGFISAIVAKACGLMVATVLSFINFLGMQCCSCCIFTGSTFWQH
TKALFIKRAISARRDRKTIVFQLVIPAVFLLLGLLFLKLKPHPDQQSVTLTTSQFNPLLS
GGGGGGPIPFDLSQPIAREVVEYIKGGWIQSFKKSVYKFPDSKGALADAIKAAGPTLGPV
LLSMSEFLMSSFNESYQSRYGAVVMDDQYDDGSLGYTVLHNSSCQHAAPTYINVMNAAIL
RLATGDQNMTIRTRNHPLPMTKSQHLQRHDLDAFSAAVIVNIAFSFIPASFAVAIVKERE
VKAKHQQLISGVSVLSYWASTYIWDFISFLFPSFFAIVLFYIFGLDQFIGRDCFLPTILI
FLEYGLAIASSTYCLTFMFSDHTMAQNVVLLVHFFTGLILMVISFIMGLIETTTSANNFL
KNFFRISPGFCFADGLASLALLRQGMKDKSSDAVFDWNVTGASICYLGIESIIYFLLTIG
LELLPSHKLTPVTIKQCWRNFTNFWHGSSGFSEPLLKFPSETVAVDFDEDIDVQTERNKV
LSGSVDNAILYLRNLQKVYPGGKYGMKVAVHSLTFSVQPGECFGFLGTNGAGKTTTLSML
SGEESPTDGTAFIFGKDIRSNPKAVRRHIGYCPQFDALLEFLTAREHLELYARIKGVADY
RMNDVVMEKLVEFDLMRHADKPSFALSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIA
KRFMWEVISHLSTRQGKTAVILTTHSMNEAQALCTRMGIMVGGRLRCIGSPQHLKTRFGN
HLELEVKPTEVSSVDLENLCRIIQERLLNIPSNPRSLLDDLEVCIGAVDCITSENASVAE
ISLSQETIMLIGRWLRNEERARSLISSTPVSDGVFGEQLAEQLVRDGGIPLPIFSEWWLA
KEKFSAIDSFVLSSFPGATFQACNSLSVKYQLPYKDGLSLADVFGHLEQNRNQLGVAEYS
ISQATLETIFNHFAASF
NT seq
5634 nt
NT seq
+upstream
nt +downstream
nt
atgggtacccgccggcggcagttgaaggccatgcttcgcaagaattggcttctaaaaatt
cgtcatccttttgttactgctgctgagattttgcttcctactgttgtaatgttactgtta
atagctgtaaggacacgagttgatacccgaattcaccctgcacagccgtatatacgagaa
aatatgtttgtggaagtggggaaaggaatttcccctaatttccaacaggttctggaacta
ttgttggcagagggggagcatttggcttttgcaccagatacagaagaaacaaggatgatg
atccacttcctgtctatgaagtttcctttaattaaggaagtttctagagtctacaaagat
gaagatgagttggaaacttatatatgctcagatctttatggtgcttacaatggagtcaag
aattattcaaatcccaaaatcaaaggagctgttatatttcatgatcaaggtcctcaatta
tttgattatagcatacgccttaatcacacatgggctttctcggggtttcctgatgttaaa
actatcatggatgtaaatggtccttacctaaatgacttggaactgggtgttagtcccata
ccaactatgcaatacagcttcagcggatttttcactcttcagcaggtggtggattcattc
ataatattttctgctcagcaaactgtgaccaatactgcaaatggacatatagagctgcca
tcttctaattccagctcttcttttctcaaagtgccatggacgcaaatgagcccttcaaaa
attagaattgctccctttccaactcgtgaatacactgatgatgaattccaaactattgtc
aagaatgtcatgggtgtactgtatctgttgggatttctctacccaatctctcgccttatc
agctatttagtgttcgagaaggaacagaaaataagagaaggtctgtacatgatgggcttg
aaagatggaatatttcacctctcttggtttattacatatgctttacagtttgcaatttca
tctgggattatcacagcttgcaccatgaataaccttttccagcatagtgataagtcagtg
gtgtttgtgtattttttctcctttggactcggtgcaattatgctgtcttttttgatctcc
acattcttcactcgagcaaaaacagctgttgcagttggaaccctttccttccttggtgct
ttctttccctattatacagtcaatgaccaggctgtccctatgatattgaaggtccttgct
tctttgctttcacctacagcttttgctcttggatcaattaactttgctgattatgagcgt
gctcatgttgggcttcgttggagcaacatatggagggggtcatctggagtgaattttttg
gtctgtctcttgatgatgtggcttgacatgctgctatattgtgcttttggtctatatctt
gacaaggttctcccgagggaaaatggagtgcgttacccatggaacttcttattcaagaat
tgcttctggagaaagaaaagtatggaagctaaacataatggcaggatttctaaattggga
aatgacactgttgaatctgctgttgaggcaataaacttggatatgaaacaacaagaactt
gataacagatgtctccaaataaggaatctgcataaggtgtatgctactaaaggtgggagt
tgtgctgctgttaattctctgcagctcaccttgtatgaaaatcagattcttgctcttcta
ggacacaacggggcgggcaaaagcacaactatttcaatgcttgttggtcttcttcctcct
acttcaggagatgctttggtgtttggaaagaatatcctgactgacatggatgagatacgg
aatggacttggtgtgtgccctcagcatgatattctttttccagaactgactgtgagagag
catctggaaatgtttgctacgctgaagggtgtaaagcaagagattctggagaccagtgta
actgatatggttgatgatgtgggtttggctgacaaagtaaacactgttgtgagggcgctt
tctggtggcatgaagaggaaattgtctcttggaattgccctgataggagatagtaaagtt
atagttcttgatgaacctactagtggaatggatccatactcgatgcgtttgacatggcaa
ttaatcaaaaaaataaaaaagggtaggataattttactaacaacccactcaatggatgaa
gctgatgaactaggagatcggatagctatcatggctaatggttctctaaaatgctgtgga
agctctctattcttgaagcatcagtatggggttggttatactcttactttagtgaagtct
gcacctacggcctctgcagctgctgatattgtttaccgccatattccatcagcaatatgt
gtgagtgaggttggaactgagatttccttcaagctccctttggcatcctccttgtccttt
gagagcatgttcaggcaaatcgaaagttgcttgagaatatcagtctcaaactcagaaata
agtagcaatgaggacaaaaaatatcttggcattgaaagttatgggatctcagttacgact
ttggaggaggtatttctgagagttgcaggatgcgactatgatgggaatgatggtttcaag
cagaggagcaatattctttcatctgattctgtggttcctacggcttctcacaatgatggc
tcagaaagagtttttgattccaaacttctaggaaattatagaaagtttttgggcttcatt
tctgcaatagtggcgaaagcatgtggtttaatggttgctacagttttaagtttcattaat
ttcttaggcatgcaatgctgtagctgttgtatctttactgggtcaacattttggcaacat
accaaggcactatttattaagagggcaatatctgctaggagagaccggaaaacaattgtt
ttccagcttgtaattcctgctgtattcctgcttcttggtcttctttttctcaaacttaag
ccacatcctgatcagcagtctgttaccttgacaacttcgcaatttaatcctctcttaagt
ggaggtggtggtggtggtccaattccttttgatctatcccagcctattgcaagagaggtt
gtagaatacattaaaggtggttggattcaaagctttaagaagagtgtgtataaattccct
gattcaaagggggcattggctgatgccatcaaagcagctgggccaactttgggaccagtc
ttactttcaatgagtgaattcttaatgtctagcttcaatgaatcttatcagtcgaggtat
ggagcagttgtgatggatgatcagtatgatgatggaagcttgggatatactgttttgcat
aatagttcttgtcagcatgctgctccaacttatatcaatgtaatgaatgcagcaattctt
aggcttgctactggtgaccaaaatatgacaatcagaacacgcaatcaccctctgccgatg
acaaaaagccagcacttgcaacgacatgacttggatgccttctctgctgctgttattgtt
aatatcgccttctcatttattcctgcttcatttgctgttgccatcgtgaaggaacgtgaa
gtgaaggctaagcaccagcagttgattagtggggtttcagtactttcatattgggcttct
acatacatttgggacttcatcagcttcttatttccttcattttttgcaatagttcttttt
tacatatttggtttggatcagtttattggaagggattgtttcttgccaacaattctgata
tttttggagtatggactagcaattgcatcttcaacatactgccttacattcatgttttct
gatcacacaatggctcagaatgtggttctgctggttcacttcttcactggactgattctt
atggttatctcattcatcatggggcttatagagacaacaacaagtgcaaataactttctc
aagaacttcttcagaatatcacctggattttgctttgctgatggacttgcttcactggcc
cttttacgacaagggatgaaagacaaatctagcgatgcagtttttgattggaatgttact
ggtgcctccatttgttaccttggcattgagagcattatttactttctcttgacaattggg
cttgaactattgccgtctcacaaattaactccagttacaatcaagcagtgctggaggaat
tttacaaatttctggcatggttcttcaggattttcagaacctcttctaaaatttccatca
gaaactgttgctgttgactttgatgaagatatagatgtgcaaacagaaagaaacaaagta
ctttcaggatctgttgacaatgccatcctttacttgcgcaatcttcagaaggtatatcct
ggaggaaaatatggcatgaaagttgctgtccattcattgactttctcagttcaaccagga
gaatgttttggctttttaggaacaaatggagctgggaagactacaactctctcaatgtta
tctggggaagaatctccaactgatggaactgcttttatttttggcaaagatatacgttca
aatcccaaggctgttcgtcggcatattgggtattgcccccaatttgatgctctcttggaa
ttcttaactgccagggagcatcttgaactttatgcaagaataaaaggagttgcagattac
aggatgaatgatgttgtcatggaaaagttggtggagtttgacttaatgaggcatgctgat
aaaccatcattcgcccttagtgggggaaacaaacgaaaattatctgttgcaattgcaatg
atcggagatcctccaatagtaattcttgatgagccatcaacaggcatggatcctatcgcc
aaacgattcatgtgggaagtgatatcccatctatctactagacaaggaaagactgctgta
attcttacaacccacagcatgaatgaagctcaggctctgtgcactcgtatgggaataatg
gttggaggcagattaagatgcattggaagtccccaacatctgaaaacacgatttgggaat
caccttgagctagaggttaaacctactgaggttagctctgtagacctagaaaatctttgc
cgaattattcaagaaaggcttctgaacattccttcaaatccaagaagcttacttgacgac
ctcgaagtttgcattggggcagttgactgcatcacatctgaaaatgcttcagtggcagaa
atcagcttgtcccaagaaacaataatgttgattggacgctggctacgcaatgaagaaaga
gcacgttctcttatatcttcaacaccagtttctgatggagtttttggtgaacagttggca
gagcagttagttcgagatggtgggataccactaccaatattttctgagtggtggttagcc
aaagaaaagttctcagctattgattcatttgtgctgtcttcatttcctggggctacattt
caagcgtgcaacagtttgagtgttaaatatcagctaccatacaaagacggcctctcgctc
gcagatgttttcggacacctggagcaaaatagaaatcaactgggcgtagcagaatacagc
atcagccaggcaactctggaaaccatctttaatcattttgcagcaagtttttga
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