Manihot esculenta (cassava): 110622004
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Entry
110622004 CDS
T05761
Name
(RefSeq) transducin beta-like protein 3 isoform X1
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110622004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110622004
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
110622004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
Utp13
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR41
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_Vps41
WDR54
Beta-prop_WDR19_1st
Beta-prop_ACSF4
Beta-prop_VPS8
Cytochrom_D1
Beta-prop_NOL10_N
WD40_like
Nbas_N
PROPPIN
Beta-prop_RIG_1st
Saw1
Motif
Other DBs
NCBI-GeneID:
110622004
NCBI-ProteinID:
XP_021622029
LinkDB
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Position
9:33064738..33073207
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AA seq
891 aa
AA seq
DB search
MASAQMKKNYRCVPSLQQFYSGGPFVVASDGAFIACACGEAIKIVDSANASIRATIEGDT
EAITALALSPDDKLLFSAGHSRQIRVWDMSTMKSVRSWKGHDGPVMGIACHGSGGLLATA
GADRKVLVWDVDGGFCTHYFKGHKGVVTSIMFHPDTNKMLLFSGSDDATVRVWDLVAKKC
VATLERHFSSVTSLAVSEDGWTLLSAGRDKVVNLWDLHGYICKMTIPTYEVMEALCVIDS
GTQISSFLDSYGQQIGKGRNGSSAIYFVTVGERGIVRIWNSECAVCIYEQKSSDVTATTP
DTDEAKRGFTSATMLPLDQGLLCVTADQQFLYYLPVKHPEEKFKIELSKRLIGYNEEILD
MRFLGEEEKFLAVATNLEQIRVYDLESMSCAYVLTGHTEIVLSLDTCVSTSGRTLIVTGS
KDNTVRLWDTESRNCIGVGTGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWNFFGISDDV
DQPVNLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRG
IWSVEFSPVDQCVITASGDKTIKIWAIADGSCLKTFEGHTSSVLRASFLTRGTQLVSCGA
DGLVKLWTVKTNECIATYDQHEDKVWALAIGKRTEMFATGGSDVVVNLWYDCTAADKEEA
FRKEEEGVLKGQELENAVLDADYTKAIQIAFELHRPHKLFELFAELCRSARMWKRAADCH
MEKALRAIGKEEIRLLFEYAREWNTKPKLCHVAQNVLFQVFKILPPTEILEIGGIGELLE
GLIPYSQRHFSRIDRLVRSTFLVDYILTGMSVIEPNIQAAETKDGSHIPSNETVLLAEHA
EEEQQQSPEVLKERTRSKKRKSKQANKARDSSHKKVKGEAYKNLAAIPLQA
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggcgcaaatgaagaagaattaccgatgcgttccgtcgctgcagcagttctac
agcggggggccgttcgtggtggcatccgacggcgcttttattgcttgtgcttgtggtgaa
gccatcaagatcgtggattcagccaatgcgtcgataagggcgactattgaaggtgacacg
gaggccattacggccttggcactcagccccgatgataaattgctgttttctgcgggccac
agcaggcaaattagagtctgggacatgtctactatgaagagcgtgcgctcatggaaaggc
cacgatggtcctgtaatgggcatagcttgccatgggtctggaggcttgctggcaacagca
ggagctgatagaaaagtcctggtttgggatgttgatggtggcttctgcacacattacttc
aaaggccataagggggttgtgacaagtattatgttccatcctgatacaaataaaatgctt
cttttctccggaagtgatgatgcgacagtacgagtttgggatcttgtagccaaaaagtgt
gtagcaacattagaaagacatttttcatctgtgacctctttggcggtatctgaagatgga
tggacattactcagtgctggaagagataaggtcgtgaatttgtgggatcttcatggctat
atctgcaagatgacaattccaacttatgaggtgatggaagctctctgtgtaattgattct
gggactcagatttcttcatttctggattcatacggtcagcagattggaaaaggcagaaat
ggatcatcagcaatttattttgtcactgttggtgaacgtgggattgtaaggatatggaac
tctgaatgtgcggtttgcatttatgaacaaaagtcctctgatgttactgccaccacccca
gacactgatgaagcaaaaagaggcttcacgtctgctactatgcttcctttagatcaagga
ttgctttgtgtgactgcagatcagcagtttctatactacctaccagttaaacaccccgaa
gagaagttcaagatagaactgagcaagaggcttattggttacaatgaagagattttagat
atgagatttttgggtgaggaggaaaaatttcttgctgttgctacaaatcttgaacagatt
cgagtgtatgaccttgaatctatgtcatgcgcatatgtattgacaggtcatactgaaatt
gttttgagccttgacacctgtgtatcaacatctggaaggacacttatagttacaggaagt
aaggacaatactgtgaggttgtgggatacagaaagccgaaactgcattggtgttggcaca
ggtcacatgggaggtgtaggggctgttgcattttcaaagaagtggaagaatttcttcgtt
agcggcagcagtgatcgcaccatcaaggtatggaatttctttggtatctcagatgatgtg
gaccagcctgttaatttgaaagcaaaagcagttgttgcagcgcatgataaggatataaac
tctctggctgttgcgccaaatgatagtttagtttgtagtggttctcaggaccgaactgct
tgtgtctggaggcttccagatctagtatctgtagttgtacttaaagggcataaaagagga
atttggtctgtagagttctcaccagtggatcaatgtgtcatcacagcatctggtgataaa
actataaagatatgggctatagctgatggatcttgtttaaaaacctttgaagggcacaca
tcaagtgtattgagagcatcatttcttactcgtggcacccaattggtttcatgtggtgct
gatggtttggtaaagctatggacagtaaaaacgaatgagtgcattgccacgtatgatcaa
catgaagacaaggtttgggccttggcaattgggaaaaggacagaaatgtttgcaaccggt
ggcagtgatgtggttgtcaatctttggtatgactgcactgctgctgataaagaggaagct
tttcgtaaagaggaggaaggagttttaaaaggccaagaattagaaaatgctgttttagat
gctgactacacgaaagctattcaaattgcatttgaacttcacagacctcataaacttttt
gagttatttgctgaactgtgcaggtccgcaaggatgtggaagagggcagctgactgtcac
atggagaaagccctacgtgctattggtaaggaagaaattcggttacttttcgagtatgct
cgtgaatggaatacaaagccaaagctctgtcatgttgcacaaaatgtgctctttcaagtt
ttcaaaatccttcctccaacggagatccttgagataggaggaatcggagagcttcttgaa
ggtcttatcccatactcgcagaggcatttcagcaggatagaccgactagtgagaagcact
tttttggtggactatattctgacaggaatgtcagttattgagcctaatattcaagctgca
gaaacaaaggatggatctcatataccctccaacgaaaccgtgcttttagcggaacatgct
gaagaagagcaacagcagagtcctgaagtgttgaaagagaggactcgttcgaagaaacgg
aaatcaaagcaagccaacaaagctagagatagttcacataagaaagtgaagggtgaagct
tacaaaaacttagctgcaattccattacaggcatag
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