Manihot esculenta (cassava): 110622019
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Entry
110622019 CDS
T05761
Name
(RefSeq) protein SMG9 isoform X1
KO
K18735
protein SMG9
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110622019
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
110622019
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Ortholog
Paralog
GFIT
Motif
Pfam:
NB-ARC
MMR_HSR1
ABC_tran
AAA_18
RsgA_GTPase
AAA_16
DUF5906
MeaB
nSTAND3
AAA_22
DO-GTPase2
Spore_III_AA
FeoB_N
Ploopntkinase3
AAA_28
AAA_29
Motif
Other DBs
NCBI-GeneID:
110622019
NCBI-ProteinID:
XP_021622044
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Position
9:32702372..32706478
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AA seq
407 aa
AA seq
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MAGSTGGTASSSPSPAPPAPKILLAKPGLVTTGPVVGKFGRGGAEDETVPHRSRLPAIGS
LNLLSDSWEFHIDRFLPFLTENTDFTVIGIIGPPGVGKSTIMNELYGFDGGSTGMLPPFT
IQSEDNRAMARHCSVGIEPRISAERLILLDTQPVFSPSVLAEMMRPDGSSTISVLSGENL
SAELAHELMAIQLGVLLASICHVLLVVSDGVHDDNMWHLLLTVDLLKHGIPDPSSHLLSS
TVGSEKENKDKLFEGEEYMATPVFVHTKLQDQNVTPHNLMQLRKALAQYFSSSSFIRERC
GSMAKENFFSSTASNTQGDDFHAMPLKLFLIPSKNKDDLPRAQHESYNSALWKLRDEVLS
MNCPSFARTVSERDWLKNSAKIWELVKSSSVIAEYSRTLQNSGMFRR
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcaggttctactggtggcaccgcttcttctagtccctcaccggcccctccggctcct
aaaatcctattggctaagcccggactggttaccactggaccggtggttggtaaatttgga
cgcggcggtgccgaagacgaaacggtgccacatcggtctcgtctgcctgcaattgggtct
ctcaatctcctctctgattcctgggaattccacattgatcgctttcttccttttctgact
gagaatacagatttcactgtgatagggataattgggccacctggagttggcaagtccacc
atcatgaatgagctttatggctttgatgggggttcaaccggaatgctaccaccgtttact
atacagtcagaagataacagagcaatggcaagacattgtagcgtaggcattgaaccaagg
atatctgctgagcgtcttatactgcttgacacccagccggtttttagcccatctgtactg
gctgagatgatgagacctgatggttcttcaacaatatcagttttgagtggtgaaaatcta
tctgctgaattggcacatgaacttatggctattcagcttggtgttcttctagcatccatt
tgtcatgttctgctcgtggtatcagatggagttcatgatgataatatgtggcatttgttg
ttgacggttgacctgttgaaacatggcatacctgatccatcttcacatttgctgagctca
actgtggggtctgagaaggaaaacaaagacaaactttttgagggtgaagaatatatggct
actccagtctttgtgcatacaaaattgcaagatcaaaatgttaccccgcataacttaatg
caactgaggaaggcacttgcacaatacttcagctcctcttcgttcatcagagagagatgc
ggaagcatggcaaaggagaatttcttttcttccacggcttctaacactcagggtgatgat
tttcatgctatgccactgaaattatttttaatcccatctaaaaacaaagatgatttgcca
agggcacagcatgaaagttacaactctgcactatggaaactgcgcgatgaggttttatcc
atgaattgcccttcctttgcaaggaccgtctcagaacgtgactggctgaaaaattctgca
aagatatgggaactagttaaaagctcttctgtcattgctgagtatagccgaacacttcaa
aactcaggcatgtttaggagatag
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