Manihot esculenta (cassava): 110622061
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Entry
110622061 CDS
T05761
Name
(RefSeq) ribosome biogenesis protein BMS1 homolog isoform X1
KO
K14569
ribosome biogenesis protein BMS1
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110622061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110622061
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
90S particles
GTPase
110622061
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIBIOP_C
AARP2CN
GTP_EFTU
Tsr1_G-like
AAA_16
AAA
AAA_22
MMR_HSR1
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
110622061
NCBI-ProteinID:
XP_021622115
LinkDB
All DBs
Position
9:complement(1009138..1021563)
Genome browser
AA seq
1204 aa
AA seq
DB search
MAEDGGSKDQEHKAHRSRQAGPKKKAKSDKKKLSTEEKKQNPKAFAFTSTVKAKRLQSRA
VEKEQRRLHVPTIDRAYGEPPPFVVLVHGPPQVGKSLLIKGLMKHYTKQNLPEVRGPITV
VSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVM
GVLTHLDKFKDVKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLNNGKYSTTEIKNLARFIS
VMKFHPLSWRTSHPYVLVDRFEDVTPPERVHMNNKCDRNVTLYGYLRGCNLKKGTKVHIA
GVGDYSLAGVTALADPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHF
VQFSKVDDENGGTKRKGKDQDVGEVLVKSLQNTKYSIDEKLENSFITLFSRNPPVASDTQ
TYVSDSNEEQRDDTKPFELNELENQIEPDRSGEESDTEYSEGSESFDEDEFTQRDAMING
EDGDSDGGNVNASNHQTSLKDRLKEQVEFHDGRLRRKATFGDDMDDQDLMASDDGSEDDD
EDNQYSDSDVSEEDGVDEGTDEDGLGNVSKWKESLVERTTLRKNINLMQLVYGTSAPNAA
IIEKQDSIDDEESDGDDFFKLKGEGNKKLKEGSDGININTEDCSKFTKYAGRKNWKEEEI
YESIRDRFVTGDWSKAAQRNQSSVTNTEEEDDIYGDFEDLETGERYESGSQPVENEEDHA
AEERRLKKLALRAKFDAQYDGSEPPEEVDEKQGAKFHRDQVNESGFFDKLKEEIELRKQR
NIAELNDLDEETRLDIEGFQTGTYLRLEVHDVPFEMVEHFDPCHPILVGGIGFAEENVGY
MQARLKRHRWHRKVLKTRDPIIVSIGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLAM
FWGPLAPPNTGVVAVQNLSNDQAAFRITATAVVLEFNHAAKIMKKVKLVGYPCKIFKKTA
LITNMFTSDLEVARFEGASVRTVSGIRGQVKKAAKDEIGNQPKKKGGAPREGIARCTFED
RILMSDIVFLRAWTQVEVPQFYNPLTTSLQPRDKTWQGMKTVAELRREHNLPVPINKDSL
YKPIERKPRKFNPLVPPKSLQAALPFESKLKDIPSRKRPRLENRRAVVMDARQKRLHTLV
QQFHMIGQEKMKKRKLKEEQKRKEYEAEKAKDEQLSRKRQREERRERYRIQDKKNKKIRR
NSEA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagatggtggtagcaaggaccaggagcataaggctcatcggtctcgtcaagca
ggtccaaagaagaaggccaaatctgataagaagaagctctcaaccgaggaaaagaagcaa
aaccctaaggcatttgcttttacttctactgtgaaagctaagcggttgcagtcacgagct
gtagaaaaggagcagcgcaggcttcatgtgccaactattgatagggcttatggtgaacca
cctccatttgttgttcttgttcatggaccgccccaggttggcaagtctctattgataaaa
ggtcttatgaagcattatacgaagcaaaatttacctgaggttcgaggccccattaccgta
gtctcaggtaagcaaaggagggttcagtttgtggagtgtccaaatgacatcaatggcatg
attgatgctgctaaatttgcagatctagctttgctgttgatagatggaagctatggcttt
gaaatggagacttttgaatttcttaatattttgcaagttcatggattcccaaaggtcatg
ggagtccttactcaccttgataaattcaaggatgtgaagaaacttaagaaaacaaagcag
aggctcaagcatcgtttctggacagaaatatatgatggggcaaaattgttctatttatct
ggtcttaataatgggaagtactctacgaccgagattaaaaatcttgctcgctttatttct
gttatgaagtttcatccattatcttggcgaacttctcacccatatgttttagtagatcgc
tttgaagatgtgactcctcctgaaagagtgcatatgaacaataaatgtgataggaatgtc
actctttatggttatttacggggttgtaacttgaagaaggggactaaggtgcatattgct
ggtgttggtgattacagtttggctggtgtaacagccttggctgacccttgtcctttacca
tcagctgccaaaaagaagggattgagagacaaggaaaaactattttatgcacccatgtct
gggcttggggatctgctgtatgacaaggatgctgtgtatataaacataaatgaccacttt
gttcaattctctaaagttgatgatgaaaatgggggaacaaaacgcaaaggaaaggaccaa
gatgtaggtgaggttttggttaaatcactgcagaacacaaagtattcaattgatgagaaa
ttggagaatagctttattacccttttcagcaggaatcctcctgttgcatctgatactcag
acttatgtaagtgatagtaatgaagagcagagagatgatacaaagccttttgagctgaat
gagcttgagaatcaaattgaacctgatcggtctggagaagaaagtgatactgaatattcg
gaaggttcagagtcttttgatgaagatgaatttactcaaagagatgctatgataaatggg
gaagatggagattctgatggagggaatgttaatgcatcaaaccatcaaactagcctcaaa
gaccggttgaaggaacaagtggagtttcatgatgggagattgagaagaaaagctacgttt
ggggatgacatggatgatcaggatctgatggcctctgatgatgggagtgaagatgatgat
gaggataatcaatattctgattcagatgtttcagaggaggatggagtggatgaaggaaca
gatgaagatggcctgggcaatgtatcaaagtggaaagagtcattggttgagcggactacc
ttgagaaaaaatattaatctcatgcaacttgtgtatgggacttctgcaccaaatgctgcc
attattgaaaagcaggacagtattgatgatgaggaaagtgatggagacgacttttttaag
ctgaaaggcgaagggaataagaaattgaaagagggatcggatggtataaacatcaacact
gaggattgctccaaatttacaaagtatgctggtcgtaaaaactggaaggaggaagagatt
tatgaaagtattcgtgatcgttttgtcacgggtgactggtcaaaagctgcccaaagaaat
caatcctctgtgacaaacactgaagaagaagatgatatctatggtgactttgaagatttg
gaaacgggtgagagatatgaatctggcagtcagcctgttgagaatgaagaggatcatgca
gcagaggaacggcgactgaaaaagctggcacttcgtgccaaatttgatgctcagtatgat
ggatctgaaccacctgaggaggttgatgagaaacaaggagccaagtttcatcgggaccaa
gtcaatgaaagtggattttttgacaagttgaaggaggagattgaactccgtaaacaaagg
aatattgctgaactcaatgaccttgatgaggaaactagattagacattgagggcttccaa
acagggacctatctaagattagaggttcatgatgttccttttgagatggttgaacatttt
gatccatgccacccaattctggttggaggaattggttttgccgaagagaatgttggatat
atgcaggcaaggttaaaacggcacagatggcataggaaggttttgaagaccagagatcct
ataattgtgtctattggttggaggcgttaccaaactacacctgtctatgcaattgaagat
cgcaatggaaggcatcgcatgctcaagtacactccagaacacatgcattgtcttgcgatg
ttctggggtcctcttgcccctcccaacacaggggtagttgctgtccagaatttatctaac
gatcaggcagcctttcggataactgcgactgcagttgtacttgagttcaatcatgcagca
aagataatgaagaaagtcaaactggttggttatccatgtaaaatattcaagaagactgca
ttgatcacaaatatgtttacttcagatcttgaagtagctcggtttgaaggtgcttctgtt
cgaactgtcagtggaatccgggggcaggtgaaaaaggctgcaaaagatgagataggtaac
caacccaaaaagaagggaggggcaccaagagaaggaattgcccggtgcacgtttgaggac
aggattttgatgagtgacattgtttttctgcgtgcatggactcaagttgaagtacctcag
ttctataacccattgaccacttcattgcaacctcgtgataagacctggcaaggaatgaaa
acagtggctgaattaaggagagaacacaatcttcctgttcctattaacaaggattcgctg
tacaagcctattgaaagaaagccaaggaagttcaacccattagtgccacccaaatcatta
caggcagcacttccatttgaatccaaactaaaagatataccaagtcgaaaacggccacgt
cttgaaaatagaagagctgttgtcatggatgctcgacagaaaagacttcatactcttgtt
cagcaatttcatatgattggacaggagaagatgaagaagcgaaagctcaaggaagagcag
aagagaaaagaatacgaagcagagaaagccaaggacgagcaattgtcaagaaagcgccag
agagaagaacgacgggagagatatcgtatacaggacaaaaagaataaaaaaatacgtaga
aattcagaggcctag
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