KEGG   Manihot esculenta (cassava): 110622067
Entry
110622067         CDS       T05761                                 
Name
(RefSeq) cyclin-H1-1 isoform X1
  KO
K06634  cyclin H
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03022  Basal transcription factors
mesc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    110622067
  09124 Replication and repair
   03420 Nucleotide excision repair
    110622067
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110622067
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110622067
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     110622067
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     110622067
SSDB
Motif
Pfam: Cyclin_C_2 Cyclin_N TFIIB REV1_C
Other DBs
NCBI-GeneID: 110622067
NCBI-ProteinID: XP_021622123
LinkDB
Position
9:36099067..36104452
AA seq 334 aa
MADFQTSTHRAKWIFTPQQLVEKHKVTNQRAKQMLEKCGTTRIEVDVDGSLSYPETQANA
ADNADKHSRPKPLSVDEEQFMRVYYEYKLREVCSAFYFPHKIQATALIYFKRFYLQWSVM
EHDPKHVMLTCIYAACKIEENHVSAEELGKGISQDHQMILNYEMIVLQSLEFDLIVYAPY
RSVEGFINDMEEFCHATDDQIQMLKDMQATAITEVDKILFTDAPLLFPPGQLALAALRIA
NEMHQVLDFERYLRNILSRQNSVHTISNLTESLDAIDSWVKKYKFPTEKDMKHINRKLKS
CWGHSSHDDKKREKKSKHKSHKSSNEMQNGPTLA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggccgattttcagacctcgactcacagagccaagtggatcttcactcctcaacagctg
gttgagaagcacaaagttactaatcaaagagccaagcaaatgctggagaagtgtggtaca
acaaggatagaagtagacgttgatggatcactgtcataccctgaaactcaagccaacgca
gcagacaatgctgataagcattctcgtccaaaaccactcagcgttgatgaagaacaattt
atgcgagtgtactatgaatataaactacgagaagtttgcagcgccttttactttcctcat
aaaattcaggcaactgcacttatatacttcaaaaggttttatcttcaatggtcggtcatg
gaacatgatccaaaacatgtaatgttaacctgtatatatgcagcttgtaagattgaagaa
aatcatgtatcagcagaggagcttggtaaggggatttcacaggatcatcaaatgattctc
aattatgagatgatagtgcttcagagcttggaatttgatcttattgtctatgcaccgtat
cgttcagttgaaggttttatcaacgatatggaggaattctgtcatgcaacagatgatcaa
attcaaatgctgaaggatatgcaagcaactgcaattacggaggttgacaaaatcctgttt
actgatgcaccattgctttttcctcctgggcagttggcattggctgctttgcgaatagca
aatgagatgcatcaggttcttgattttgagagatatctcagaaacattctttcgcgtcag
aattctgtgcacacaatttcaaatctcactgaatctctagatgctatagattcttgggta
aagaaatacaagtttcctacagaaaaggatatgaagcacataaaccggaagttgaagtct
tgttggggtcatagttcacatgacgataaaaagcgggagaagaaatcaaaacacaagtcc
cataagagttcaaatgaaatgcaaaatggcccaaccctcgcatga

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