KEGG   Manihot esculenta (cassava): 110622111
Entry
110622111         CDS       T05761                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03020  RNA polymerase
mesc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110622111
  09124 Replication and repair
   03420 Nucleotide excision repair
    110622111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110622111
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110622111
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     110622111
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      110622111
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 110622111
NCBI-ProteinID: XP_021622194
LinkDB
Position
9:complement(34435113..34438246)
AA seq 138 aa
MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ
YVKRFSRYKNPDAVKQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD
DEAIEKMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctggagaagaggaagaaaatgctgctgagctcaaaattggagatgaatttttgaag
gcgaagtgcttaatgaattgtgaagtagcattaattcttgaacataaatatgagcagctt
cagcagatgtctgatgatccaatgaatcaagtttctcaggtatttgagaaatcattacag
tatgtgaagcgctttagccgttataaaaatcctgatgctgtcaaacaagttcgagaaatt
cttagtcgataccagttggctgaattcgagctgtgtgttcttggcaacctttgccctgaa
actgtggaggaagctattgccatggttccttctatcaagacaaaaggaagagctcatgat
gatgaggcaattgagaaaatgttgaacgacttgtcgttgatcaagaaatttgaatag

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