Manihot esculenta (cassava): 110622456
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Entry
110622456 CDS
T05761
Name
(RefSeq) LOW QUALITY PROTEIN: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
KO
K08775
breast cancer 2 susceptibility protein
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03440
Homologous recombination
mesc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110622456
03460 Fanconi anemia pathway
110622456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110622456
03036 Chromosome and associated proteins [BR:
mesc03036
]
110622456
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110622456
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
110622456
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
110622456
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
110622456
FA (Fanconi anemia) pathway
Downstream FA components
110622456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
110622456
NCBI-ProteinID:
XP_043815477
LinkDB
All DBs
Position
9:complement(31331147..31339395)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSTWKIFSDTGNNFRWEPSGQIIHRRPLHGPNNPPIQPRCSTPRLPSMADVLRQGLSLSL
SHYMCRITIFLFLMYVSGVICFVECSPLLENGEEDIEHAPMFRTGLGNSVALKQSSIAKA
LSILEDNDNAISSGETHSTDNDCGFNNSLFCTGSGKSVNVSSAGLFRAKALLGLENNNDV
SISQVFQHPRKSSNSNATEEHEWQGLSHLRMKESTKNSSMESVPRPSLISKASSIGSKLS
NVVNQNLLQPELHNSISKPPPIKFHTAGGRSLSVSSDALERAKSLLGDPDFGALLNEEDV
VDPALSVYKESRFNDASSTKETDFRAFTYPGTAKSKQISKIFTSPMRLSTKHIQSSLNSE
NIVSGISLIKKFDAVDDDKFYRLDNTSPFPQRPLSNGSSKTDMVEDKSLEICDVSRINQN
VRSSRGPLVDISNTIGTVYTNNEKRRFGRGSSTSPFKRPRSSKFTTPLNRNVSYAPSGLS
ASSSENSCCRRMISTRYPFQIPRMYMKEYFGVPSSDKGLLEHLADEVRRIKPETAEKYTF
CDESGLNYIGGEAFYHMLVQSGASVQYASKQWIANHYKWIVWKLACYERCYPLKSATRFL
TVTNVLEELKYRYEREVNHGHRSAIKRILEGDASPSSMLVLCISAICISCEPKIENVAVN
GGECTSGAKVELTDGWYSIESLLDVPLSKQLAAGKLFVGQKLRIWGAGLCGWVGPVSPLE
APRTVSLSLHINGTYRAHWSDRLGFCKDAGPPLAFRCIKSNGGLVPRTLVGVARIYPVLY
KEKFITGGSIVRTERMEAKTLQSYNQRHSAVVEGIVSEYQRGMKGSYICNDSDSEEGAKI
LKILETAAEPEVIMAEMSPEQLTSFASYQAKLEAIKQLDMEKAVKKALQDAGLAERDVTP
FMRVRVVGLTNYQDKCFPKEGLITIWNPTEKQQNELVEGQAYAVEGLSPVNSDSNTLYLQ
ARGSTTKWRPLSPFTVQRYQPFFSSRVSVLLSNLGEVPLSSEFDTAAYVVHVGEVYTTAQ
WKRQWVFVTDSSISTLDLEEMSNSLLAISFCSPYIDGDSFTPINYNLAGSTVSFINLIKK
AKDQINNLWIAEATENSIYSLSFDSPNCSHLKNAAASAQSWAKTSSLAIDKLKEKVLHII
GDHKG
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgtggaagatcttctccgacaccgggaataattttcgctgggagccatccggt
caaatcatccaccgcaggcccttacatggaccaaacaaccccccgattcaacctcgctgc
tctactcctcgtctcccttccatggccgatgtcctacgtcaaggtctctctctctctctc
tctcattatatgtgccgcattacaatattcttgtttttgatgtacgtatctggtgtgatc
tgctttgtagaatgttcgccgcttctagaaaacggcgaagaggatatcgagcatgctccg
atgttccgcacaggattagggaattcggttgcattgaaacaatcttcgattgcgaaagcg
ttgtctattcttgaagacaatgacaatgctatcagctctggtgaaacgcattctacagac
aatgattgtggattcaacaactccctgttctgtacagggtcagggaaatcagtcaatgtc
tcttctgctggtcttttcagagccaaggcattattaggcttggaaaataataatgatgtc
tccatttctcaagtctttcaacatccaaggaaatcatctaattctaatgccactgaagaa
catgagtggcagggtttatcacatttgaggatgaaagagagtacgaaaaatagttccatg
gagtcagtaccaaggccatctttaatttctaaggctagttcaattggaagcaaattatca
aatgtggttaatcaaaacttgttgcaacctgagctgcataattctatttccaagccgcct
cccatcaaattccatactgcaggtggaagatccttatctgtttctagtgatgcattggaa
cgtgcaaagagtcttcttggtgacccggactttggtgctttgttaaatgaagaagacgta
gttgatccagccctttctgtttacaaagagagtaggttcaatgatgcttcatccacaaag
gaaacagattttcgcgcttttacttatccggggactgcaaaaagcaagcaaatctcaaaa
attttcacatcccctatgaggttatctacaaaacacatccagtcatccttaaattcagaa
aacattgtttcaggaattagcttgataaagaaatttgatgcagttgatgacgacaaattt
tataggttggataatacttcccctttccctcagaggcccttaagcaacgggtctagtaaa
actgatatggtagaagataagtccttggaaatttgtgacgtttcaaggattaatcaaaat
gtaaggtcatctagggggccattggttgacatctcaaataccattggcacagtttacaca
aataatgagaagaggagatttggaaggggatcatcaacatctccattcaagaggccccgt
agctccaaatttaccacccctttgaacaggaatgtctcatatgctcctagtggtttatct
gcttcatcttctgaaaattcttgctgcagaagaatgatttccactagatatccttttcag
attccaagaatgtatatgaaggagtattttggagtgccttcctcagacaaaggcttgttg
gagcacttggcggatgaagtaagaaggatcaaaccagaaactgcagaaaaatacacattt
tgtgatgaatctggcctgaattacattggaggagaagctttctaccacatgttggttcaa
tcaggagcttcagtacaatatgcttctaaacagtggattgcaaatcactacaagtggata
gtttggaaactcgcatgttatgagagatgctaccccttgaaatctgccacaaggttttta
acagttaccaatgtgcttgaagagctgaagtatagatatgaaagagaagtgaaccatggc
caccgctctgcaattaagagaattctggaaggagatgcatctccttcttcaatgttggtc
ctgtgcatttcagctatctgcattagttgtgaaccaaagattgagaatgtagcagtaaat
ggaggtgaatgtactagtggtgcaaaagtggaactaacagatgggtggtattcaatagaa
tctcttttggatgtaccattgtcaaagcaacttgccgcaggaaaactgtttgtggggcag
aaacttcgaatatggggagctggattatgtggctgggttggccctgtttcacctcttgag
gcaccgaggacagttagcttgtcgttgcacattaatggaacttacagagctcactggtct
gaccgattaggattttgcaaggatgctggtcctcctttggcatttaggtgcatcaaaagt
aatgggggtctcgtccctcggacattagttggagtcgcaagaatataccctgtcctgtac
aaggaaaaatttattaccggtggatcaattgtgagaacagagagaatggaggctaaaact
ctgcaatcatacaaccagaggcattctgctgttgtagaaggcatcgtttctgagtaccaa
agagggatgaaagggtcttacatctgtaatgacagtgatagtgaagaaggagctaaaatt
ttgaagatactcgagacagcagcagaaccggaagttataatggcagagatgagtccagag
cagctaacttcatttgcctcttaccaagcaaaactagaggcaataaagcaattggacatg
gagaaggcagttaagaaagctctgcaagatgctggcttagcggagagagatgtgacccca
tttatgagggttagagtggttgggttaactaattatcaagacaagtgctttcctaaagag
ggcctgataaccatttggaacccaacagagaagcagcaaaatgagctggttgagggacag
gcctatgctgtagaaggactgtcacctgtgaactctgactcgaatacactatacttacaa
gcaagaggatctacaaccaaatggcgacccttatctcccttcacagtccaacgctaccag
ccctttttcagttctcgagtgtctgtattattgtcaaatttgggtgaagttcctctttcc
agtgaatttgatacagctgcatatgttgtgcatgtgggagaggtttatacaactgcacag
tggaagagacagtgggtgtttgttactgatagctccatttccaccttagatttggaggaa
atgtcaaattctttacttgccatcagcttctgctcaccatatatagatggtgactcattc
acaccaatcaactataatcttgcaggatccacagtcagcttcattaatctcattaagaag
gcaaaggaccaaataaataacctctggattgcagaagcaacagaaaattcaatttattct
ttaagttttgattctccaaattgttctcaccttaaaaatgctgctgcttctgcacaaagc
tgggcaaaaacttctagcttggctattgataaactcaaagagaaagttctacatattatt
ggcgatcataaaggctag
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