Manihot esculenta (cassava): 110622467
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Entry
110622467 CDS
T05761
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110622467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110622467
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110622467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
EIF3I
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
PRP4
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SCAP
eIF2A
Beta-prop_Nup120_160
WD40_like
Motif
Other DBs
NCBI-GeneID:
110622467
NCBI-ProteinID:
XP_021622660
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Position
9:3333205..3337761
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AA seq
578 aa
AA seq
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MAADEDNSSPAPAPEPAPTPAPQEPSAAVPENQTIVPQIQPIIAPAVPSFVPPIAPIPPV
PPPAIPRPLAPLPIRPPVLRPPTVSQNVEDRTSDSDSDQGDSGAAGTVPGSTGDYEFSEG
SRIARERKQKIVQEIMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRM
LMAKLDAEGQLEKLMKAHEDEEAAATAATVDAEEEMLQYPFYTEGSKELLDARIDITKYS
ILKAASRLQRARRKRDDPDEDLDAEIDWALKQAGSLVLDSSEIGDDRPLSGCSFSNDGKL
LGTCALSGGAKIWSMPQVNKVGTLKGHTERATDIAFSPVQNHLATASADRTARLWNADGS
VLGTFEGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSIYGLSFH
QDGSLAGSCGLDALARVWDLRTGRSILALEGHVKPILGISFSPNGYHLATGGEDNTCRIW
DLRKKKPLYIIPAHSNLISQVKFEPQEGYYLVTASYDMTAKVWSGRDFKPVKTLSGHEAK
VTSLDISADGRYIATVSHDRTIKLWSSSSNEKDAMDVD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagatgaagataattcatcgccagcaccggcaccggaaccggcaccgacgccg
gcacctcaggagccatctgctgcagttcccgaaaatcaaactatagttccacaaatacaa
cccataattgcaccagcagtcccttcatttgtgccacctattgctccaatacctccagtt
cctcctcctgcaattcctcgccccttagcgcctctccctatccgcccgcctgtccttagg
ccgcccactgtttcgcaaaatgttgaagatagaaccagtgactcagattccgatcaaggt
gactcgggcgccgctgggactgttccgggatcgactggtgattatgagttttccgaagga
agcagaatagcaagagagaggaagcagaagattgttcaggaaatcatgatgaagcgccga
gctgctgctctggcagtgcctactaacgacatggctgtccgggcgcgtctccggcggttg
ggagaaccaataacgctttttggagaacgggagatggagagacgagacaggctaagaatg
cttatggcgaagctggatgcagaggggcaattggagaaactgatgaaagcccatgaggat
gaggaggctgcagctacggcagctacagtagatgccgaggaagaaatgcttcaatacccc
ttttacaccgagggttcaaaagagcttttggatgctagaattgatatcacaaaatattca
attctaaaagctgcttcgagacttcaacgtgcaaggaggaaaagggatgatccagatgaa
gatttagatgctgaaattgattgggccttgaagcaggctgggagcttggtacttgactct
agtgaaattggagatgaccggccactttctggttgttccttctcgaatgatggaaaattg
ctcggtacctgtgcgttaagtggaggtgctaaaatctggagcatgcctcaagtaaacaag
gtgggtacattgaagggacacactgaacgtgcaacagatattgcattttctcctgtgcaa
aaccatttagcaactgcctcagctgatcgaactgcaaggttgtggaatgctgatggttct
gtccttgggacatttgagggccatctggatcgccttgcacgcattgctttccatccatca
gggaagtatttgggcactacaagctttgataagacatggagactatgggatgtagatact
ggtgtggaattacttcttcaagaaggccacagtaggagtatctatgggctatccttccac
caggatggttccttagcaggatcttgtggattggatgcactcgcacgtgtttgggacctt
cgtactggaagaagtattctggctttggagggccatgtcaagccgattcttggtatcagt
ttttcacccaatggttatcatttggccaccggtggtgaagataatacttgtcgtatatgg
gatttaaggaagaaaaagccattgtatatcatacctgctcactcaaatctaatatcacaa
gtgaagtttgagcctcaagagggttactacctggtcactgcatcttacgacatgactgct
aaggtttggtcaggccgagactttaagcctgtcaagacattgtcaggacatgaagcaaaa
gttacttctttggatattagtgcagatgggcggtatattgcaactgtctcgcatgatcga
actatcaagctctggtccagcagtagcaatgaaaaggatgctatggatgtagactag
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