Manihot esculenta (cassava): 110622521
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Entry
110622521 CDS
T05761
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110622521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110622521
03012 Translation factors [BR:
mesc03012
]
110622521
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110622521
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110622521
Translation factors [BR:
mesc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110622521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
Rad17
T2SSE
ABC_tran
NPHP3_N
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
110622521
NCBI-ProteinID:
XP_021622743
LinkDB
All DBs
Position
9:complement(8114110..8124204)
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AA seq
1042 aa
AA seq
DB search
MSLRLLRSNSFFTLTSNSKTLQQPLAAPISGSKILSSRLQISTIAMSRRPNFQGGRRGGR
GSSSSVPGRGGGGRGGRGGGGGGRGEQRWWDPVWRAERLRQKAAEMEVLDENEWWDKMEN
MKNGGDEEMIIKRNYSRADQQTLSDMAYQLGLYFHAYNKGKTLVVSKVPLPDYRADLDER
HGSTQKEIQMSRETERRVGNLLSSSQRAAPAIDSAASGQGDRQPSNGLKITKPVSTLESS
SAKEKLSIELKQRQDKLMASNSVKELQSFRKKLPAYKVKGEFLNAVSENQVLVISGETGC
GKTTQLPQYILEEEIARLCGAHCSIICTQPRRISAISVAARISSERGENLGETVGYQIRL
EAKRSDQTRLLFCTTGVLLRQLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRR
PDLRLILMSATINANLFSKYFGNAQIIHIPGLTFPVTELFLEDILEKSRYKIQSEAGSFQ
GNSRRRKREQDSKKDPLTELFEDVDISSEYKNYSASTRLSLEAWSGSLLDLGLVEATVEF
ICRHEGDGAILVFLTGWDEISKLLDRIKGNKLLGDPSKFSVLPLHGSMPTINQREIFDRP
PPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRR
GRAGRVQPGVCYRLYPKIIHNAMLQYQLPEILRTPLQELCLHIKSLQLGTVGSFLAKALQ
PPDPLSVQNAIELLKTIGALDDNEELTPLGRHLCTLPLDPNIGKMLLLGSIFQCLNPALT
IAAALAHRDPFVLPIDRKNEADAAKRSFAGDSCSDHIALVKAFEGYKEAKHNRNERAFCW
ENFLSPITLQMMEDMREQFLTLLADIGFVDISRGARAYNQYSHDLEMVSAILCAGLYPNV
VQCKRRGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIYIRDSTNISD
YALLLFGGSLFPSNNGEGIEMLGGYLHFSASKSVLELIKKLRAELDKLLWRKIEDPSLDI
SMEGKGVVSAVVELLHSYNLRF
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgcgcttgctccgctctaactcttttttcactctcacttccaattccaagact
ctccaacaaccactagccgcacccatttctggatcaaagattttatcctctcgcttacag
atctctactatcgccatgtctcgccgtcctaacttccagggcggccgccgaggtggccgc
ggcagcagcagtagcgtgcctggtcgaggtggtggaggacgtggaggtcgtggaggagga
ggaggtggacgtggtgagcagaggtggtgggacccagtttggcgagcggagcgcttgaga
cagaaagccgctgagatggaagttcttgatgagaatgaatggtgggataagatggagaac
atgaagaatggaggagatgaggagatgattataaagcgtaactacagtcgcgctgaccag
caaaccctctctgacatggcttatcaattgggtctttacttccatgcatataataaggga
aagacacttgtggttagcaaagttccgttgccagattatcgggctgatcttgatgagcgt
catggatccacacagaaagagatccaaatgtctagagagactgagaggagagttggaaat
cttttgagcagctcacagagagcagcacctgctattgattctgcagcatctggtcagggg
gacagacaaccatcaaatggtctaaagataacaaaacctgtctctaccttggaatcaagt
tctgctaaggagaaactcagtattgaattaaagcagaggcaggataaactgatggcaagt
aattctgtgaaggaattgcagtcttttagaaaaaagctccctgcatacaaagtgaagggc
gagtttctgaatgctgtttctgaaaatcaggttttagtaatttcaggagagacaggttgt
ggtaaaacaacacagctacctcaatatatattggaagaggagatagcaagactgtgtggt
gctcactgcagcataatatgcacacagccccgtcgtatatctgccatatctgttgcagct
cgaatatcatctgaacggggagagaatcttggtgaaactgttggttatcagattcgcttg
gaggcaaagcgatctgatcagacacggctcctcttctgcaccactggtgttttacttcgc
cagttggttcaggatccagatttgactggtgtgagccatttgttagttgatgaaattcac
gaacggggtatgaatgaggactttctattaattattttgcgtgaccttctccctcggcgt
ccagatttacgtcttattctaatgagtgcaaccattaatgccaatttgttctcgaaatac
tttggaaatgcccaaattattcatataccgggattgactttccctgtgacagagttattt
ctagaagacatattggagaaatctcgttataaaatccaatcagaggctggcagctttcag
ggtaattcaaggaggaggaagagggaacaagattccaagaaagatcctttgactgaatta
tttgaggatgttgatattagttctgaatacaagaattacagtgcatctactcgactctct
cttgaagcttggtcgggttcactgcttgacttgggtctggtggaggcaacagttgaattt
atttgtcgccacgaaggggatggtgcgattcttgtgttccttacaggctgggatgagatt
tccaagctacttgaccggattaaaggaaacaaacttttgggagacccaagcaagttttca
gtccttcctctacatggttcaatgcctacgatcaaccaacgtgaaatatttgatcgtcct
ccgcctaacaagcgaaaaattgttcttgcaaccaatattgcagagagtagcatcaccata
gatgatgttgtgtatgttgtagactgtggaaaggcaaaggaaaccagttatgatgctcta
aacaagctagcttgtctattaccatcatggatttcaaaggcttcagcacatcagagacga
ggtcgagctggccgtgtgcaacctggagtttgttatagattgtatccaaaaatcatccat
aatgcaatgcttcagtatcagttacctgaaattctccgaacacctctacaagagctatgc
ctgcacatcaaaagtttacagctaggaactgttgggtcatttttggctaaggctcttcag
ccaccagatcctctctctgttcaaaatgctattgaactccttaaaaccattggggcttta
gatgataatgaggagcttactccacttggccgccatctttgtactctgccgctggaccca
aatattggaaagatgcttctgttgggttctatctttcaatgcctcaatccagctttaaca
attgcagctgctcttgcgcatcgtgatccatttgttcttccaattgataggaaaaatgag
gctgatgctgcaaaaagatcctttgctggtgattcttgcagtgatcacattgcacttgtc
aaggcttttgaaggatacaaggaagcaaaacataatcgaaatgaaagagctttttgttgg
gaaaattttttatctccaataactctgcagatgatggaggatatgagagagcaatttctc
accttactagcagacattggctttgttgacatatctaggggtgctagagcttacaatcaa
tacagccatgacttggaaatggtatcagcaatcctttgtgctgggctttacccaaatgtt
gtacagtgcaaaagaagaggaaagcgcacagcattctacactaaagaagttgggaaagtg
gacatacatcctgcatctgtaaatgcgggggttcatcttttccctctgccgtacatggtt
tacagtgaaaaggtgaaaacaactagcatttatattcgagactcgacaaacatatcagat
tatgctctgctcctgtttggtggtagcctttttcctagcaataatggagaaggtattgag
atgctgggtggttaccttcatttctctgcatcaaagagcgtgttggagttgataaagaaa
ttgcgggcagaacttgacaagcttctgtggaggaagatagaggacccaagtttggacatt
tctatggagggaaagggggttgtttctgctgtggtcgagttattgcacagttacaattta
cgtttctga
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