Manihot esculenta (cassava): 110622632
Help
Entry
110622632 CDS
T05761
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110622632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110622632
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110622632
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110622632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
110622632
NCBI-ProteinID:
XP_021622910
LinkDB
All DBs
Position
9:34045305..34059713
Genome browser
AA seq
910 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFESEIEGLSVKKGKTRPPRLTHLEASIVRHKS
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDELYSSLPLDKVES
LEDLVTVGPPGLVKGAPIHGLKTNLVAPASASTSTSQMPAIATSAHQQATSVQEQADDTA
SQDSNSDIVARTPPAKSGIIGSSAASTPTMNHATPVSVGVSAPIFSSVSASSILPSSISV
RGVLENAASAIPSSPATLGNSGKEEEIAGFPVHRPSPALADPGLARGIARGSLPSQPSSS
IPLSSGAVPSNGALSAVTSASDIAKRSILSTDDRLVSSGMVQPLTSPLSNRMILSQTGKN
NDATGMVDSSNVGEAAAIGGRVFSPSLVPGMQWRPGSSFQNQNEPGQFRARTEIAPDQRE
KFLQRLQQVQQQGHSTLLGMPPLAGGNHKQFSAQQNPLLQQQFNSQSSSISSQASLGLGV
QAPGLSTVTSAAIQQQSIQQQNSIHQPSSPQVVMSSGVKDADVGHLKAEEQQQPQNLPDD
SIPESAATSGLSKNLVNEDELKATYAMDTPTGTSASLAEPIQVPRDIDLSPGQPIQSSQP
STALGVIGRRSVSDLGAIGDNLSGSAVNSGSMHDQLYNLQMLESAYHKLPQPKDSERARS
YTPKHPAATPPSYPQVQAPIVNNPGFWERLTMDSYGTDTLFFAFYYQQNTYQQYLAAKEL
KKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFE
YNYLEDELIV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccgcaagctacaaggcgagattgatcgcgttctgaagaaggtccaagaa
ggcgtcgatgttttcgacagcatctggaacaaggtttatgatacggacaatgcaaatcag
aaagagaaatttgaggcagatttgaaaaaggagataaaaaagctacagagatacagggat
caaataaaaacatggattcaatctagtgagatcaaggataagaaggttagtgcctcttac
gagcaggctttagtggatgctcgaaagcttattgagcgtgaaatggagagatttaagatc
tgtgagaaggaaacaaaaacaaaggcattttctaaggaagggctgggccaacaaccaaaa
actgatccaaaggagaaggctaaatcagagacaagggattggttaaacaatgtggttggg
gagttggaatctcagattgatagctttgaatctgagattgagggactctctgttaagaaa
ggaaaaacaaggccgcctagactgacacatttggaggcgtctattgtacgacacaagtct
catataatgaagttagaattgatcttgaggctactggataatgatgaattgagtcctgag
caggtcaatgatgtcaaagactttcttgatgactatgtggaacgtaatcaggaggatttt
gaggaatttagtgacgttgacgagctttacagctcattgccactagacaaggtggagtct
cttgaagatcttgttacagttggtcctcctgggcttgtcaagggtgcaccaattcatggc
ttgaagactaatttagtagcaccagcatcagcatcgacatcaacatctcaaatgcctgct
attgccacttctgctcatcaacaggctacttctgttcaggagcaagctgatgatacagct
tcgcaggatagtaattctgatattgttgccagaactccacctgccaaaagtggtattatt
ggttcttctgctgcatcaacaccaaccatgaatcatgcaactcctgtttcagttggggtt
tcggctcctatattttctagtgtttcagcctcttcaattcttccaagttcaatttccgtt
agaggtgtgctggaaaatgcagcttctgccattccttcctctcctgcaaccctgggaaat
tctgggaaggaggaagaaattgcaggctttcctgtccatcggccttcaccagctcttgct
gatcctggattagcaaggggcattgctagaggtagcctccctagccagccttcatctagt
atccctcttagttctggtgcagttcctagcaatggagctcttagtgcagtaacgtcggca
tctgacattgcaaaaagaagtattttatcaacagatgatagacttgttagtagtggaatg
gtgcaacctttgacttctccattaagtaatcgaatgatcttgtctcagactggcaagaat
aatgatgcaactggtatggttgattctagtaatgttggtgaagctgctgcaataggtgga
agagtattttctccttctttggtccctggcatgcaatggagacctggaagttcatttcaa
aatcagaatgagccagggcaatttcgtgcaagaactgaaatagcacctgatcagagggag
aaatttttgcaacgccttcagcaagtccagcaacaaggtcatagcacccttcttggtatg
ccacctcttgctggtggaaatcataaacagttttctgcccaacaaaaccccttattgcaa
cagcagtttaattctcaaagttcatccatctcttctcaagctagtctgggactaggagtt
caggcacctggtctcagtactgttacatctgctgccattcagcagcaatccattcagcag
caaaactccatccatcaaccgtctagtcctcaagttgtgatgtcaagtggtgtaaaagat
gctgacgttggccatttgaaagctgaggagcagcagcaacctcagaatttacctgatgat
tcaattcctgaatctgctgctacatctgggctgagcaaaaatcttgtgaatgaggatgaa
ctgaaagctacatatgcaatggatacacctacaggaacatctgcttctttggcagagcct
attcaagtgcctagagatattgatctctcgcctgggcaacccatacaatccagccagcct
tctactgcccttggtgttattggtcggagaagtgtctccgaccttggtgccattggtgat
aatctcagtggatctgctgtgaattctgggtcaatgcatgatcagttgtacaatttgcag
atgcttgagtctgcttatcacaaacttccacaacctaaggactcagaacgagctagaagc
tatactccgaagcaccctgcagccacacctcccagctatcctcaagttcaggcacctatt
gtaaataatcctggattctgggaacgattaaccatggatagttatggcactgatacttta
ttctttgcattctactaccaacagaatacatatcagcaatatttggctgcaaaagaacta
aagaagcaatcctggagatatcacagaaaatacaacacctggtttcaacggcacgaggaa
cccaaagttgctactgatgaatatgaacaggggacttatgtttactttgatttccatatc
gccaatgatgacctccaacatggatggtgtcaaagaatcaagactgagttcacttttgag
tacaactatcttgaagatgaacttattgtctag
DBGET
integrated database retrieval system
