Manihot esculenta (cassava): 110622708
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Entry
110622708 CDS
T05761
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110622708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110622708
03012 Translation factors [BR:
mesc03012
]
110622708
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110622708
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110622708
Translation factors [BR:
mesc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110622708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
ATPase
AAA_16
nSTAND3
AAA_19
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
110622708
NCBI-ProteinID:
XP_021623003
LinkDB
All DBs
Position
9:complement(29499081..29522110)
Genome browser
AA seq
1144 aa
AA seq
DB search
MRNAKLRDFIVGCTKSVSSNHILHSYGCRRPANLLTLILSVPQSSIFTRPFSGSAAEQFS
DDEYECDFETHKASSVANVDEWKWKLSLLLRNETDQEIVSRDRKDRRDYEQISNLATRMG
LYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVESLLQEHLDRTRLLSGE
AGDCADDSKPIDQVDDFSPDENPDSFLDGSVMEKVLQRRSLRMRNMQRAWEESPEGKKMM
GFRKSLPAFKEKEKLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCSIIC
TQPRRISAMAVADRVSAERGEPLGETVGYKVRLEGMRGKNTHLLFCTSGILLRRLLSDRN
LNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAELFSNYFGGAPKI
HIPGFTYPVNAHFLEDVLEMTGYKLTSFNQIDDYGQEKVWKTQKQLAPRKRKNQIASLVE
DTLNKSSFENYSSRVRDSLAYWTSDGIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISC
LRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPPPNIRKIVLATNMAEASITIND
IVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEA
FAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSAALQPPEPLAVQNAIDFLKMIGALNE
KENLTNLGKYLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFLLPQDKKDLAG
TAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFNFI
LRDAGLIDVDAGANNRLSHNQSLVRAIICSGLYPGIASVVHRETSMSFKTMDDGQVLLYA
NSVNARYQTIPFPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALSCGVQAGHLKMLHG
YVDFFMDPSLAECYLKLKEELVNLIQEKLQDPTLDIYKEGKYLLLAVQELVSGDQCEGRF
VFGRESKKPKESSENSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFK
GMQFVGKPRKNKQLAERDAAIEALAWLTHTSENNQDEHNDSPPDVTDNMLKLLGKRRRSK
RNSG
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcggaatgccaagttaagagatttcattgtgggatgcaccaagtctgtatctagcaat
cacatacttcattcatacggctgccgtcgccccgccaatttgcttactttgattttatcc
gtccctcaatcttccatttttactcgccctttctccggttctgctgctgagcagttctct
gatgatgagtacgagtgcgatttcgagacccataaggcatcctcggtggctaatgttgac
gagtggaaatggaaacttagcttgctattgcggaacgaaactgaccaagagattgtgtct
agagatagaaaggataggagggactatgagcagatttcgaaccttgccacaaggatggga
ctttacagtgaaatgtatggaaaagtggtggttgcaagcaaggttcctcttcctaactat
agaccggatttggatgacaagcggccccagagggaggtggtaatcccgctaagcttacaa
aggagggtagagagtttactacaggaacatcttgatagaactcggctactttctggagaa
gccggtgactgtgcagatgattctaagcctatagaccaggttgatgattttagtccagat
gaaaatccagattcttttttagatggatctgttatggaaaaggttcttcagagaaggagt
ttgcgaatgcgtaatatgcaaagagcttgggaggaatcacctgaaggcaagaagatgatg
ggcttccggaaatctctgcctgcattcaaggaaaaggaaaagctactccaagcgatagca
aggaatcaggttatcgtagtatctggggagactggatgtggtaaaacaactcaacttcct
cagtatatattggagtcagaaattgaatctgggcgcggagcattctgtagtataatttgc
acacagcctcgaagaatatctgctatggctgttgcagatagagtgtctgcagagagagga
gagcctcttggtgaaacggttggttataaagttcgactagagggcatgagaggaaaaaat
acccatctgctcttttgtaccagtggaattttacttagacggctgctaagtgacagaaat
ttgaatggtgtaacccacgtttttgttgatgaaattcatgagcgtggcatgaatgaagac
ttcctattgattgtgctcaaggatcttcttccccgtcgtcaggacttgagattgatttta
atgagtgctacattgaatgcggaactcttctccaactattttggtggagcacccaaaatt
catattccaggctttacatatcctgtgaatgcacactttttagaagatgtactggaaatg
actggatataagttgacttcttttaatcaaattgatgactatggccaagagaaagtgtgg
aaaacacagaagcaacttgcaccacgaaaaaggaaaaaccagattgcttctcttgtagag
gacacacttaataaatcaagttttgagaactatagctccagggttcgtgattctctagca
tactggacgtctgatggcattggatttaaccttattgaggcagttctgtgccatatatgt
cggaaggaacgacctggtgctgtcttggtattcatgactggctgggaggatattagctgt
ttgagggatcaacttaaagctcatcctcttttgggtgatcctaacagggttttgctttta
acatgccatggttctatggcaacctctgaacagaaacttatatttgagagacctcctcct
aatatacgtaaaatagttcttgcaactaatatggcagaggcaagtattactatcaatgac
atagttttcgtggtggattgtggaaaagctaaagagacaacatatgatgctttgaataat
acaccttgtctgctgccctcatggatatcacaagcttctgcgcggcaaagaagaggtagg
gctggccgtgtgcagcctggtgaatgttatcacctctaccctaaatgtgtttatgaagct
tttgctgaatatcaacttcctgaacttctgaggactcccttaaactctctttgcctgcaa
ataaagagtttgcaggttggaagtatagcagaatttttgtcagcagctctccaacctcca
gaaccattggctgtccaaaatgccattgattttctgaagatgataggtgcactaaacgag
aaggagaatctgactaatcttggcaagtacttgtcaatgcttccagtagaccccaagctt
ggtaagatgctaattatgggtgccatctttcgctgctttgaccctgtgttgacaatagta
tccggtctgagtgtcagggatcctttccttcttcctcaagacaaaaaagacttggctggt
acagcaaaatccagattttcagcaaaagactacagtgatcacatggctcttgtccgtgca
tatgaaggatggaaagatgcagaacgagaagggtcagcatacgagtattgctggagaaat
tttctctctgcacaaactcttcaagccatccattctctgaggaagcagttcaacttcatt
ttaagggatgctgggttaatagatgtggatgcaggagccaacaacagattaagtcacaac
cagtcgttggttcgagctatcatatgctctggtctctatcctggcatagcatcagtagtg
cacagagaaacatccatgtctttcaagactatggacgatggccaagttctgttatacgct
aattctgtgaatgcgcgctatcagactattccttttccatggctggtctttggtgaaaaa
gttaaggtcaatacagttttcatacgtgattccactggtgtatctgattccatattgatc
ctttttggcggtgctcttagttgtggtgtgcaggctggtcatcttaaaatgttacatggg
tatgttgattttttcatggatcctagtttagcagagtgctatttgaagctcaaggaagaa
cttgttaatctgattcaagagaagcttcaagatcctactcttgacatttacaaggaaggg
aaatacctcctgcttgctgttcaagagctggtttcaggagatcaatgtgaaggaaggttt
gtttttggacgtgaaagcaagaagcccaaggaatcaagtgaaaacagtagatttacaaaa
gatggaacaaatccaaaaagcttgctacaaactcttttgatgagagctgggcactccccc
ccaaaatacaaaacaaaacacctcaagacaaatgagtttcgggcactggttgaattcaag
ggaatgcagtttgtgggtaaaccaaggaaaaacaaacaactggcagagagggatgctgct
atagaagcactggcctggttgactcacacctctgagaacaatcaagatgagcacaatgat
tccccacctgatgtcactgacaacatgttaaaacttctggggaaacgccggagatcaaag
cgtaactctggttga
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