Manihot esculenta (cassava): 110622765
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Entry
110622765 CDS
T05761
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110622765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110622765
03009 Ribosome biogenesis [BR:
mesc03009
]
110622765
04131 Membrane trafficking [BR:
mesc04131
]
110622765
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mesc04147
]
110622765
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
110622765
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
110622765
Membrane trafficking [BR:
mesc04131
]
SNARE
SNARE associated proteins
Others
110622765
Autophagy
Aggrephagy
Other aggrephagy associated proteins
110622765
Exosome [BR:
mesc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110622765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
AAA_17
Mg_chelatase
ATPase_2
Parvo_NS1
AAA_18
IstB_IS21
Viral_helicase1
ABC_tran
NACHT
AAA_7
Vps4_C
NB-ARC
AAA_24
AAA_lid_PRS2_C
TsaE
DUF815
Zeta_toxin
Sigma54_activat
Sigma54_activ_2
Zot
Motif
Other DBs
NCBI-GeneID:
110622765
NCBI-ProteinID:
XP_043816163
LinkDB
All DBs
Position
9:11023973..11029195
Genome browser
AA seq
805 aa
AA seq
DB search
MSNQAESSESKGTKRDFSTAILERKKAPNRLVVDEATNDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTVCIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQI
FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN
PEAMEEDVEDDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSE
ASGAATGSDPFAASAGGADDDDLYN
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagctgaatcctctgaatctaagggaaccaagagggattttagtactgcg
attttggaaagaaagaaggcgccaaatcgtcttgttgttgatgaggctaccaatgatgat
aactcggttgtctctctccatcccgataccatggagaagctacagctctttcgtggagat
acgatcttaattaaggggaagaaaaggaaagatacagtctgcattgctcttgctgatgac
acgtgtgatgagccaaagatcaggatgaacaaggttgtgagatcgaacctgagggttagg
ctcggagatgttgtctctgtgcaccagtgtcctgatgtcaagtatggaaagcgtgttcac
atactgcctatagatgacacgattgaaggggtcactggaaatatatttgatgcatacttg
aagccttatttcctggaggcatatcgccccgtcaggaagggtgatctcttccttgtgaga
ggtggaatgagaagcgtggagttcaaagttattgagactgacccctcagaatactgtgtg
gttgccccagacactgaaattttctgtgagggagagcctgtaaggagagaagatgaaaat
agattggatgaagttggctatgatgatgttggcggtgttagaaaacagatggctcagatt
cgggagttggtggagcttccactgagacatccacaattattcaaatcgattggtgtgaag
ccccccaaaggaattctgctttatggacctcctggttctgggaagactctaattgcacgg
gctgttgcaaatgaaactggtgctttcttcttctgtattaatggacctgagatcatgtcc
aaattggctggggaaagtgaaagcaatcttagaaaagcttttgaggaagcagaaaagaat
gcaccatctattatctttattgatgagattgactcaattgctcccaagcgggaaaagaca
catggagaagttgagaggaggatagtctcccagctcttgacacttatggatggactaaaa
tcccgtgcacatgttattgttattggggccacaaatcgtcccaacagcattgacccagct
ttgagaaggtttggtagatttgatagggaaattgatattggtgttccggatgaagttggg
cgtcttgaggttcttcgtatccacacaaagaatatgaagcttgctgaagatgttgatttg
gaaagaattgcgaaagacacacatggttatgttggtgctgatttagctgctctttgcacc
gaggctgcacttcaatgcattcgggagaaaatggatgtaatcgacttggaagatgagaca
atagatgctgagatacttaactccatggcagtgtctaatgaacacttccaaactgcactt
ggaacaagcaatccatctgctctgcgtgaaactgttgttgaagtacctaatgtgagctgg
gaagatattggaggccttgagaatgttaagcgagagcttcaagagactgttcaatatcca
gtggagcatcctgagaaatttgagaagtttggaatgtcaccatctaagggggttcttttc
tatggccctcctggatgcgggaaaactcttctggctaaagctattgccaacgagtgccag
gcaaatttcatcagtgtcaagggtcctgaattgcttacaatgtggtttggtgagagtgaa
gccaacgtgcgagaaatttttgacaaggctcgccaatctgctccttgtgtcctcttcttt
gatgaactggactcaattgccactcagagaggaagcagtgtaggagatgctgggggtgct
gctgatagggttttgaaccagcttctgacggagatggatggcatgtctgcaaagaaaact
gtttttataattggagccactaatagacctgacatcattgatcctgcacttctgcgtcct
ggccgtcttgatcagttgatttacatccctcttcccgatgaggaatctcgtcatcaaatt
ttcaaggcttgcttgaggaaatcgccagtctccaaagatgttgacctcagagcacttgcc
aaatatactcagggcttcagtggtgctgatattactgagatttgccagcgtgcttgcaaa
tatgctattagggagaacattgaaaaggatattgagagggagaggagacgtagagataac
ccagaagcaatggaggaagatgtcgaggatgatgtggcagagatcaaggcagcacatttt
gaggagtctatgaagtatgcacgtaggagtgtgagcgatgccgacatccgcaaataccag
gcattcgctcaaactttgcaacaatcaagaggctttggaagtgaattcaggttttctgaa
gctagtggtgcagctactggatctgatccttttgcagcttctgcaggcggggctgatgat
gatgacctttacaattaa
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integrated database retrieval system