KEGG   Manihot esculenta (cassava): 110622765
Entry
110622765         CDS       T05761                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    110622765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesc03019]
    110622765
   03009 Ribosome biogenesis [BR:mesc03009]
    110622765
   04131 Membrane trafficking [BR:mesc04131]
    110622765
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mesc04147]
    110622765
Messenger RNA biogenesis [BR:mesc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     110622765
Ribosome biogenesis [BR:mesc03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    110622765
Membrane trafficking [BR:mesc04131]
 SNARE
  SNARE associated proteins
   Others
    110622765
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    110622765
Exosome [BR:mesc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   110622765
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_2 AAA_33 AAA_5 AAA_22 AAA_14 TIP49 NPHP3_N RNA_helicase nSTAND3 AAA_28 AAA_17 Mg_chelatase ATPase_2 Parvo_NS1 AAA_18 IstB_IS21 Viral_helicase1 ABC_tran NACHT AAA_7 Vps4_C NB-ARC AAA_24 AAA_lid_PRS2_C TsaE DUF815 Zeta_toxin Sigma54_activat Sigma54_activ_2 Zot
Other DBs
NCBI-GeneID: 110622765
NCBI-ProteinID: XP_043816163
LinkDB
Position
9:11023973..11029195
AA seq 805 aa
MSNQAESSESKGTKRDFSTAILERKKAPNRLVVDEATNDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTVCIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQI
FKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDN
PEAMEEDVEDDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSE
ASGAATGSDPFAASAGGADDDDLYN
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgtctaaccaagctgaatcctctgaatctaagggaaccaagagggattttagtactgcg
attttggaaagaaagaaggcgccaaatcgtcttgttgttgatgaggctaccaatgatgat
aactcggttgtctctctccatcccgataccatggagaagctacagctctttcgtggagat
acgatcttaattaaggggaagaaaaggaaagatacagtctgcattgctcttgctgatgac
acgtgtgatgagccaaagatcaggatgaacaaggttgtgagatcgaacctgagggttagg
ctcggagatgttgtctctgtgcaccagtgtcctgatgtcaagtatggaaagcgtgttcac
atactgcctatagatgacacgattgaaggggtcactggaaatatatttgatgcatacttg
aagccttatttcctggaggcatatcgccccgtcaggaagggtgatctcttccttgtgaga
ggtggaatgagaagcgtggagttcaaagttattgagactgacccctcagaatactgtgtg
gttgccccagacactgaaattttctgtgagggagagcctgtaaggagagaagatgaaaat
agattggatgaagttggctatgatgatgttggcggtgttagaaaacagatggctcagatt
cgggagttggtggagcttccactgagacatccacaattattcaaatcgattggtgtgaag
ccccccaaaggaattctgctttatggacctcctggttctgggaagactctaattgcacgg
gctgttgcaaatgaaactggtgctttcttcttctgtattaatggacctgagatcatgtcc
aaattggctggggaaagtgaaagcaatcttagaaaagcttttgaggaagcagaaaagaat
gcaccatctattatctttattgatgagattgactcaattgctcccaagcgggaaaagaca
catggagaagttgagaggaggatagtctcccagctcttgacacttatggatggactaaaa
tcccgtgcacatgttattgttattggggccacaaatcgtcccaacagcattgacccagct
ttgagaaggtttggtagatttgatagggaaattgatattggtgttccggatgaagttggg
cgtcttgaggttcttcgtatccacacaaagaatatgaagcttgctgaagatgttgatttg
gaaagaattgcgaaagacacacatggttatgttggtgctgatttagctgctctttgcacc
gaggctgcacttcaatgcattcgggagaaaatggatgtaatcgacttggaagatgagaca
atagatgctgagatacttaactccatggcagtgtctaatgaacacttccaaactgcactt
ggaacaagcaatccatctgctctgcgtgaaactgttgttgaagtacctaatgtgagctgg
gaagatattggaggccttgagaatgttaagcgagagcttcaagagactgttcaatatcca
gtggagcatcctgagaaatttgagaagtttggaatgtcaccatctaagggggttcttttc
tatggccctcctggatgcgggaaaactcttctggctaaagctattgccaacgagtgccag
gcaaatttcatcagtgtcaagggtcctgaattgcttacaatgtggtttggtgagagtgaa
gccaacgtgcgagaaatttttgacaaggctcgccaatctgctccttgtgtcctcttcttt
gatgaactggactcaattgccactcagagaggaagcagtgtaggagatgctgggggtgct
gctgatagggttttgaaccagcttctgacggagatggatggcatgtctgcaaagaaaact
gtttttataattggagccactaatagacctgacatcattgatcctgcacttctgcgtcct
ggccgtcttgatcagttgatttacatccctcttcccgatgaggaatctcgtcatcaaatt
ttcaaggcttgcttgaggaaatcgccagtctccaaagatgttgacctcagagcacttgcc
aaatatactcagggcttcagtggtgctgatattactgagatttgccagcgtgcttgcaaa
tatgctattagggagaacattgaaaaggatattgagagggagaggagacgtagagataac
ccagaagcaatggaggaagatgtcgaggatgatgtggcagagatcaaggcagcacatttt
gaggagtctatgaagtatgcacgtaggagtgtgagcgatgccgacatccgcaaataccag
gcattcgctcaaactttgcaacaatcaagaggctttggaagtgaattcaggttttctgaa
gctagtggtgcagctactggatctgatccttttgcagcttctgcaggcggggctgatgat
gatgacctttacaattaa

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