Manihot esculenta (cassava): 110622782
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Entry
110622782 CDS
T05761
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110622782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110622782
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110622782
mRNA degradation factors
5'-3' decay
Decapping complex
110622782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
EIF3I
Motif
Other DBs
NCBI-GeneID:
110622782
NCBI-ProteinID:
XP_021623108
LinkDB
All DBs
Position
9:12312625..12327463
Genome browser
AA seq
1457 aa
AA seq
DB search
MASPGNPPNQGGGVFDVNKLFKPSSSPMNMNMMQSSNPPQQQQPQPQPPLSPSSSNPVVG
NLTTSPSFPLPSSLPASSPPYLTPSSSYPPPTGPYHPYHPHYLTPYPTPAPQLQQHHNQF
LTNMQQQNRLQPISSFPPPATAVAAPSIAPSPSPFSPNNPNPSGVLMDILTNHHHQQQHP
PSTSLIMPFSSASSSSAVSNFNAPIPSAPPVSLASPTHQPQQPSPTPMRMLSSKLPKGRH
LIGNHVVYDIDVRLQGEVQPQLEVTPITKYVSDPGLVLGRQIAVNRNYICYGLKPGAIRI
LNINTALRSLLRGHNQKVTDMVFFAEDVHLLASTCIDGRVFIRKINEGSDEEEKPQIFER
IILALQIISEGESVHPRVCWHPHKQEILMVAIGNHILKIDTIKVGKGEVFSAEKLLNCST
DKLIDGVQLAGKHEGEVTELSMCQWMTTRLASASADGTVKIWEDRKAVPLAILRPHDGDP
VNSVAFLTAPHRPDHIVLITGGPLNQEVRIWVSASEEGWLLPRDAESWQCNQTLTLKSSA
ESTFEDAFFNEVVALPHAGLFLLANAKKNAIYAIHIEYGPYPAATRMDYIAEFTVTMPIL
SLTGTSDSLPNGEHVVQVYCVQTQAIQQYALNLSQCLPPPLENMELEKKESNVSRIFDAA
SSDGSTIMKSSHESKPTMVPLGKGAPIEPMLSSSSENAPTASHPESLTASEVAILPDIDT
SGVDTKDGASASHNSIENIGILSPPLPSSPQLSQKLSGFHGPSKSIEPSMQLNNHVVDQP
VLDYLVEHRMDTANDMADVPSSGDNLRKGQKNISQTDISVVPEPPVTFKHPTHLITPSEI
LSRGSSSAENSQICQVMNVGEAKIQDVVVNHDMESVEVEVKVVGETGTNQSNDFDLPRES
HANVPEKKEKPFYSQASDLGIQMARDCSVEAYTVGGIQQALESGVSDISDRPPTNGEDGG
HDIRKDTPEKVGESETSVVVPQSTPSTKGKKQKAKNSQFSGPSSPSASPYNSTDSSNEPG
CSSGAQSSDAALSQLSAMQDMLDQLLSMQKEMQKQMAVMVSVPVSKEGKRLEASLGRSIE
KVVKANTDALWARFQEENTKHEKLERDRTQQMINLITNCVNKDLPSTLDKTLKKEIAAVG
PAVARAITPTLEKSISSAINESFQRGVGEKAVNQLEKSVSTKLEGMVARQMQSQFQTSGK
QALQDALRSSLEAAIIPAFEMSCKSMFDQIDSTFQKGLINHLNAAQQQFDSAHSHLAVAL
RDAINSASSITQTLSSELAEGQHKLFAIAAAGVNSKVANPSLSNGPLAALHEMAEAPLDP
TKELSRLIAECKFEEAFTAALHRSDVSIVSWLCSQVDLPGILSMVPLPLSQGVLLALLQQ
LACDISKETSRKLAWMTDVAVAINPSDPMIAVHVRPIFDQVYQILSHQRNLPTTPASESA
SIRLLLHVINSVKMSCK
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggtaatcctccaaatcaagggggtggcgtgtttgatgtgaataagctg
ttcaagccgtcttcaagccctatgaatatgaatatgatgcaatcttcaaacccaccacaa
cagcagcagccacagccacagcctcctttgagtcctagcagctctaacccagttgttggc
aatctcacaacttctccttcctttcctctcccttcatctcttcctgcttcttcgcctcca
tatttaactccatcttcctcttatcctcctcctactgggccttaccacccttatcaccct
cactacctcactccttatcctactcctgctccacaacttcaacagcatcacaatcagttc
ctcactaacatgcaacagcagaatagacttcaacccatttcttcttttcctcctcctgct
actgctgtcgctgcaccttctattgctccttctccttctcctttctcgcctaataaccct
aatcccagtggtgtattaatggacatcctcaccaatcaccaccaccagcaacaacatcct
ccctccactagtctcatcatgcccttctcttccgcatcttcttcgtcagctgtatctaac
ttcaatgctcccatcccatctgccccgcctgtcagtttggcatccccaactcaccagccg
cagcagcccagcccaacccccatgagaatgctcagcagcaagctccccaaagggcgccat
ttgattggcaaccatgtcgtgtatgatattgatgtcagattgcaaggcgaggtgcagcca
caactcgaagtcactcccatcaccaagtacgtctctgatcctggtcttgtacttggccgt
cagatagctgtcaatagaaattacatttgctatggacttaagcctggagctattcgcatc
ctcaatatcaatactgccttgagatccttgctccgcggacataaccagaaagtaacagat
atggtgttctttgctgaggatgttcaccttctggccagcacatgcattgatggacgggtc
ttcatacgaaagatcaatgaggggtcagatgaggaagagaagcctcaaatttttgaaagg
attatccttgcccttcagataatatcagagggagaatcagtccatccacgagtttgttgg
catcctcacaaacaagaaattttgatggttgccattggaaatcatatcctgaaaattgat
accattaaagttggcaaaggtgaagtattttcagcagagaaacttctcaattgttccact
gataagttgattgatggggtccagcttgctggtaagcatgagggtgaagttactgagttg
tcaatgtgtcaatggatgaccacccgtttagcttcagcttcagcagatggcacggtcaag
atttgggaagaccgaaaagcagtgccacttgcaattttaagacctcatgatggtgaccct
gtaaactctgtggcattcttgactgctccccaccgtcctgatcatatagttcttatcact
ggggggccactgaatcaggaagtgaggatttgggtctctgcaagtgaggagggctggctg
ttgcctagggatgctgaatcgtggcagtgtaatcagacattgaccttaaagagttctgct
gaatctacttttgaggatgcattctttaatgaagttgtagcactgcctcatgctggctta
tttctgttggcgaatgccaagaagaatgctatttatgcaatacacatagaatatggacct
tatccagctgctacccgcatggattacatagctgagtttacagtgacaatgccaattttg
agtctaactggaactagtgacagtttacctaatggagaacatgttgttcaggtttactgt
gtccaaacacaggctattcagcagtatgctttgaatttgtcacagtgcctaccacctcct
ctggagaacatggagttggagaaaaaagaatctaatgtttctcgtatttttgatgctgct
agttctgatggttccactatcatgaaatcttctcatgaaagtaaaccaactatggttccc
ctaggtaaaggggctcccatagaacctatgctttccagcagttctgagaatgctcccaca
gcaagccatcctgaaagcctgactgcctctgaggttgctatcttgcctgatattgatact
tcaggtgtagacaccaaggatggtgcttcggcttcacataatagtattgaaaatattggt
atcttgtctcctccacttccatcgagtccacagctctctcaaaaattgtcaggcttccat
ggtccatcaaagagcatcgagcctagcatgcaactcaataatcatgtagttgaccagcct
gtccttgactatttggttgagcacagaatggatactgcaaatgacatggctgatgtccct
tcttcaggtgacaatttgaggaagggtcagaaaaacatttcacaaactgacatctctgtg
gttcctgaacctcctgtaacgtttaaacacccaacccatcttataaccccatcggaaata
ctatcaagaggttcctcatctgctgagaattctcaaatttgtcaggtcatgaatgtggga
gaggcaaagatccaggatgtggttgtcaaccatgacatggaaagtgtggaggtagaggtt
aaagttgttggagagacaggaaccaatcaaagtaatgactttgacttgcctagagaatcc
catgccaatgttccagagaaaaaggaaaaaccattctactctcaggcctcagatcttggt
atccagatggccagagattgttctgtggaagcctatactgtagggggaattcagcaggct
cttgaaagtggtgtctcagacatatcagatagacctccaacaaatggtgaagatggaggg
catgatataagaaaagatacacctgaaaaggttggtgaatcagaaacttctgtggtagtc
ccccagtccactccatctacaaaaggaaaaaaacaaaaagcgaaaaactctcaattttct
ggtccatcgtcgccttctgcaagtccttacaactccacagattcatccaatgaaccaggt
tgcagttctggtgcccaatctagtgacgctgctttatctcaattgtctgccatgcaagat
atgcttgatcagttactgagcatgcagaaagaaatgcagaagcagatggctgtgatggtt
tctgtcccagtttccaaggaaggcaaaagactagaggcatccttgggccggagcattgag
aaagttgttaaagctaatactgatgctttatgggctcgtttccaagaagaaaacacaaag
catgagaagttagagcgagatcgtactcaacagatgattaatttgattacgaattgtgta
aacaaggatttaccaagcactttagataaaactttaaagaaggagatagctgcagttgga
cctgctgtagctcgtgcaattactcccactctggagaaaagcatatcttcagcgattaac
gagtcattccagagaggggtgggggagaaggcagtgaatcaactggaaaaatctgttagt
acaaaacttgaaggcatggtagccaggcaaatgcaatcacagtttcaaacttctggaaag
caagctcttcaggacgcactgagatctagtttggaagctgcaattattccagcatttgag
atgtcatgcaaatctatgtttgatcaaattgattccacgtttcaaaaagggctcattaat
catctcaatgctgctcaacaacagtttgactctgcacattctcacttggccgttgctctt
agggatgccatcaattcagcatcatcaatcactcagaccctgagtagtgaattagctgag
ggccaacacaagctctttgctattgcagctgccggtgtgaactccaaagtagcaaatccc
tctttgagtaatggaccattggctgctttacatgaaatggctgaagctcctttggatcca
acaaaagaattatccagattgatagctgagtgcaaattcgaggaagcattcacagcagcg
ctgcacagaagtgatgtctctatagtttcctggttatgttctcaggttgatctgccgggg
attttgtccatggtcccattacccttgagccaaggagttcttctggcccttttacagcaa
ctggcctgcgatatcagcaaagaaacttctagaaagctggcatggatgactgacgtggct
gttgctataaacccttcagatccaatgattgcagtacatgtgaggccaatatttgatcaa
gtgtatcagatactgagccatcagaggaatctacccactacacctgcttcagaatctgcc
agtatacgtcttcttctgcatgtcataaactctgtgaaaatgagctgtaaatga
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