Manihot esculenta (cassava): 110622838
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Entry
110622838 CDS
T05761
Name
(RefSeq) RRP12-like protein isoform X3
KO
K14794
ribosomal RNA-processing protein 12
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mesc03009
]
110622838
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
90S particles
Other 90S particles
110622838
Pre-60S particles
Other pre-60S particles
110622838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
HEAT_GCN1
UME
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
110622838
NCBI-ProteinID:
XP_021623209
LinkDB
All DBs
Position
9:complement(4277914..4292804)
Genome browser
AA seq
1171 aa
AA seq
DB search
METNLESHVAEESEIPFKDDSDICHQLLSRYSTSKAPHHRHLLATAAAIRSILTSESLPL
SPAAYFVAAIDNLSDSESLDSNAIAALLSFVSIVVPLIPNNGIKGDKASEAVKVLVGVAE
RDGLGAASVSGLVKCLGVLIVGFCDLEDWGSVKEGFETVLKFSIDKRPKVRRSAQDCLEK
VFKSLRSSTVIKESSKLVLSLFKSCKPVVLAMSRSKVIDGSKSETLSKPENLEGLHMLNL
LKVTVPYISVKISAKVLSEILQLMHSHFTALTRHIFKIFEAFIEKSREEVIGPHIEKIIN
SLSLFMSSGEKNSMDTVIFASNLSKLALYKLHAGGSRLWVSNVPKVCGSIAGFLTCETTV
ASQASLIIKEMINHFMDQKVLFLDEHQSFEDVSQESEEADMIKSTCAIFENILSSYNGIP
NEHLLEVISALFLKLREGSFIFMKNLVLKLTDLMKLVSQDKSNTNHLQDCIGSAVVAMGP
EKILTLIPISVHADNFTCSNIWLVPILRTHIVESSLGYYMEHILPLAESFLKASHKVKKS
VVAQDLQAYAHDLRGLLPAFCHYPVDTHSKFKSLAELLVAFLKEDPSMHQIVVVAIQVLV
SQNRSAIISRNNAGEAYSNAERDTLLEFRSASSYSKKTATKNIKALSSCSTELLQALMNL
FVDSVPEKRLYIKDAVGCLASITDSSITKNILMSLLKRLQLADGKGEFAQLTSCGDESTD
TEGTVGKKKDVKRCVMMELASSLVEGAKEDLIDLLYNYVVHVFKETDATGHCGAYHTLSR
ILEEHAWFCSSQFIELLDLLLGLKPPTDIASLRKRFACFHILMVHTLERSSEEDNTKAFL
MLNEIILTLKDAKDETRKVAYDTILLISSALRISSCAGSGEAYHKLISMIMGYLSGPSPH
IKSGAVSALSLLVYNDADICLNIPDLVPSLLSLLQSKGVEVIKAVLGFVKVLVSSLQAKD
LQNFLSDITNGVLLWSSVSRFHFRSKVTVIMEIMMRKCGSAAVELVTPDKYKGFVKTVLQ
NRHHKPTSKEAGSNDTETAFTDSSGKRMNKQKKKESGSVAEENGSVQHRKRKRKNKENDN
PRTMREPRIPSSGGYGPKGTKKARHSGYQKSTKGKSADDTKKRKFVKESTSGGNKKMKFQ
NTSKKGKTAIHRPASRVHKHNKFGKKQKTGD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggagacaaaccttgagagccacgtagctgaagagtcggaaattccattcaaagatgac
tccgacatttgccatcaactattgtcccgctattccacctccaaagccccacaccaccgc
cacctcctcgccactgctgccgccatccgctccattctcacctccgaatccctcccttta
agccctgcggcgtacttcgtcgccgcgatcgataacctctctgattccgaaagcctagat
tccaatgcgattgcggcgctcttgtcgtttgtttctatcgtggtgcccttgattccgaac
aacgggattaagggtgataaagcgagcgaggcagtgaaagttttggtgggggtggcagag
agagatgggttaggagcggcaagtgtcagtggcttggtcaagtgtttgggggttttgatt
gtggggttctgcgatttggaggattggggctctgttaaggaaggatttgaaactgtgctt
aaattctccattgataagcggcctaaggtcaggaggagcgctcaagattgccttgagaag
gtttttaagtctcttcggtcttcaactgttatcaaggaatcgagcaaattggttctgtcg
ttgttcaaaagttgcaagcctgtggtacttgcaatgagtcggtcaaaggttattgatggg
tctaaaagtgaaacattatcaaagcctgaaaaccttgagggtctccatatgctgaatttg
ctgaaggttacagttccgtatatctctgtcaaaatcagtgcaaaagttctctcggaaata
cttcagcttatgcattcccatttcacagcacttacaaggcatatttttaaaatttttgaa
gcatttatcgagaagtctcgagaggaagttattggcccacacatagaaaaaattataaac
tctctttctctttttatgtcttccggagagaagaactcgatggacactgtcatttttgca
tcaaatttgtcaaaacttgctttgtataagcttcatgctggagggtcgaggttgtgggtg
agtaatgtgcctaaagtttgtggttccatagcaggttttttgacttgtgagactaccgtt
gcgtcacaggcttcacttattattaaagagatgatcaaccattttatggatcaaaaagtg
ctctttcttgatgaacaccagtcatttgaagatgtaagtcaagaaagcgaagaagcagat
atgataaaatcgacatgtgctatctttgagaatattctgagctcatataatggaattccg
aatgagcatcttttggaagtgatatctgctttatttctgaagcttcgagagggctcattt
atcttcatgaagaatcttgttctcaagctcacggacttgatgaagcttgtcagtcaggat
aaatccaacacaaatcatcttcaggattgcattggatctgctgtagttgctatggggcca
gagaaaattcttacactcatacccatctctgttcatgctgataactttacttgttcaaac
atctggttggtacccatattgaggacacacattgttgaatcatcactagggtattacatg
gagcatattctgcctcttgcagaatccttcttgaaagccagtcataaagttaaaaagtcg
gtagttgctcaagatctgcaggcttatgcccatgaccttcggggattgctacctgccttt
tgtcactatcctgttgacactcacagtaagtttaaatctttggctgaactccttgttgcc
tttctgaaggaagatccttccatgcatcaaattgttgttgttgccatacaggttcttgtc
agtcaaaataggagtgcaattatctctagaaataatgctggcgaagcttatagcaatgca
gaaagagatacccttttggagtttagaagtgcttcctcttattcaaagaaaactgcaaca
aaaaacatcaaggcattgtcatcatgttccaccgagttgcttcaggctctaatgaaccta
tttgttgattctgtacctgagaagcgcttatatataaaggatgctgttggatgcttggct
tccattactgattcctctatcaccaagaacattttaatgtcattgctcaagaggcttcag
cttgcggatggtaaaggtgaatttgcacagctgacaagctgtggagatgaatcgactgat
acagaaggaactgttgggaagaagaaagatgtaaagaggtgtgtgatgatggagctagca
tcttctcttgttgaaggagcaaaggaggatttgattgatctgttgtataattatgttgtc
catgtttttaaggaaactgatgcgactggtcattgtggagcatatcacactttaagcaga
attttggaggaacatgcctggttttgttcttctcaatttattgagctattagacttgtta
cttggactgaaacctccaactgatattgcatccctaaggaaacggtttgcttgtttccac
attctcatggttcacacattagagagaagctcggaggaggataatacaaaggcttttctt
atgctcaatgagatcatactgactttaaaggatgcaaaggatgaaactaggaaagtggct
tatgatacaatcctcctgataagttctgctttaagaatctcatcatgtgcaggttctggt
gaagcttatcacaaattgatcagcatgataatgggttatctttcaggtccgtctcctcac
ataaagagtggagcagtgtctgcactgtctctacttgtgtacaatgatgcagacatctgt
cttaacattcctgatcttgttccctccctcttatctttgctgcaaagcaaaggtgtggaa
gtcataaaagctgttctgggttttgtgaaagtactagtatcatccttgcaagctaaagac
ctgcagaattttctatcggacatcaccaatggagttctcttgtggtcatctgtctctaga
tttcattttagatctaaggtgacggtcataatggagatcatgatgcggaagtgtggttct
gctgcagttgagttagttaccccagacaagtacaagggttttgtcaagactgttctgcag
aatcgtcatcacaagcctacatccaaggaagctggatccaatgatacagaaactgcgttt
acagattcatctggcaaaaggatgaataagcagaagaaaaaagaatcaggttctgtggcg
gaggaaaatggttcagtgcagcataggaagagaaagagaaaaaataaggaaaacgataac
cctcgtaccatgagggagccacgtataccgagcagtggtggctatggacctaaaggaact
aagaaagctaggcactctggatatcaaaaatcaacaaagggtaagtcagcagatgataca
aagaagaggaagtttgttaaagagtctacaagtggtgggaacaaaaagatgaaattccag
aacacgagcaagaaaggcaaaacagcaattcatagacctgcctccagagtacacaagcac
aataaatttggaaagaaacaaaagactggtgactag
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