Manihot esculenta (cassava): 110622881
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Entry
110622881 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11 isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110622881
03041 Spliceosome [BR:
mesc03041
]
110622881
03036 Chromosome and associated proteins [BR:
mesc03036
]
110622881
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110622881
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110622881
mRNA cycle factors
Common to processing body (P body) and stress granule
110622881
Spliceosome [BR:
mesc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110622881
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110622881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110622881
NCBI-ProteinID:
XP_021623268
LinkDB
All DBs
Position
9:complement(7305630..7312073)
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AA seq
634 aa
AA seq
DB search
MRTSWADSGSNSASESAVPAYSGNSSGSRPTRATYVPPHLRNRTPSADLPAASPAAQAQP
QANDRVGYGGPPGGSRWAGGSRPDYGRQAYGSGGRTGGGSSGSSSGGGSSGWNNRSGGWD
RGREREVNPFGNDDEGEGTLNEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEA
LNQNIRRCKYVKPTPVQRNAIPIILAGRDLMACAQTGSGKTAAFCFPIITGIMREQYAQR
SRGPRTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELERGVD
ILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGRRQT
MLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIIQRVEYVHETDKRSHLMDLLHAQ
RETETNGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGKT
PILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNMSL
ARALSDLMQEANQEVPAWLTRFASRAPYNGGKNRRSGGGRFGGRDFRREGSFTRSTDYYG
GGNSGSGGGSSSVGYGVPSSYGGGYGPGVASAWD
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttcatgggcagattctggatcaaactctgcttcggagagtgcagttcctgct
tactctggtaacagcagcggatcacgtcctacccgcgccacttatgttcctccacacctt
cgtaaccgtacaccttcagcagatcttccggcagcctcacctgcggctcaagcacagcca
caggccaatgatcgtgtaggttatggtggacctccaggaggttcccgctgggctggtggt
tctagacctgattatgggcgtcaagcatatggttctggtggtagaactggtggcggcagc
agcggcagcagcagtggcggtggcagtagtggttggaacaatagaagtggtggatgggat
cgtggcagagagcgtgaggtgaatccatttggcaatgatgatgaaggggagggcacactt
aatgaacaagaaaatacagggattaactttgatgcatatgaggatattccggttgagaca
agtggggacaatgtgccaccgcctgtgaatacatttgcagagatagacttgggtgaggca
ttgaatcagaatattcggaggtgcaagtatgtgaagccgactccagttcaacgtaatgca
atccctataattcttgcggggcgtgacttgatggcttgtgctcagacagggtcagggaag
acagctgccttctgctttccaattattactggaattatgcgggagcagtatgctcagaga
tctcgtgggccaaggactgtttacccacttgctcttatcctctcccctacaagggagcta
tcatgtcagatacatgatgaagccagaaaattttcatatcaaactggtgtcaaggttgta
gttgcttacggaggagcaccaataaaccaacagttgcgagagcttgaaagaggggttgat
attcttgtggcaactcctggacgcctggtggatttgcttgagagggctagagtgtcactg
cagatgattagatatttggcacttgatgaggcagataggatgctggatatgggttttgag
cctcagattagaaagatagtggaacaaatggacatgcccccacctggaaggagacagaca
atgctgtttagtgccacttttccgaaagaaatacagagactcgcatctgattttctttca
aattatattttcttggctgttggaagggttggttctagtactgatttaattatccaaaga
gttgaatatgttcatgagactgacaagagaagccatctaatggaccttcttcatgcacaa
agggaaactgaaactaatggcaagcaatctttgacattagtttttgtggaaacaaagaag
ggagctgactccttggaacattggttgtgcatgaatgggtttcctgctacaacaattcat
ggtgataggacacaacaggaaagggaaatggcactaagatcattcaaaagtgggaagaca
ccaattttagtagcaacagatgtggcggctcgtggtcttgatatacctcatgtggctcat
gtagtcaactttgatcttcccaatgatattgatgattatgttcacaggatagggcgaaca
ggacgagctggaaaatcaggtctagcaacagctttcttcaatgagaacaatatgtcactt
gcaagagctctatctgatttaatgcaagaagcaaatcaggaggtacctgcttggctaact
cgctttgcttcacgagctccatataatggtggtaagaatcggcgaagtgggggcggccga
tttggtggccgtgactttagaagggagggctcttttactaggagcacagattattatggt
ggagggaatagcggtagcggcggtggcagcagcagcgtaggatatggggttcctagcagt
tacggcggtggatatggtccgggtgtggccagtgcttgggattag
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