KEGG   Manihot esculenta (cassava): 110623086
Entry
110623086         CDS       T05761                                 
Name
(RefSeq) transcription factor bHLH140
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    110623086
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110623086
Enzymes [BR:mesc01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     110623086
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     110623086
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     110623086
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     110623086
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     110623086
SSDB
Motif
Pfam: DcpS_C AAA_33 zf-C2HE HIT Macro AAA_18 nSTAND3 CPT MCM AAA_22 AAA_16 Csa3_N AAA AAA_17 Viral_helicase1 AAA_5 G-alpha Zeta_toxin NACHT AAA_19 ABC_tran AAA_29
Other DBs
NCBI-GeneID: 110623086
NCBI-ProteinID: XP_021623647
LinkDB
Position
9:complement(31031762..31036513)
AA seq 745 aa
MDMDCDDTSKHEEKSGEEKRNSIVVILVGAPGSGKSTFCEHVMRSSPRPWARICQDTINN
GKAGTKPQCLKTAASALKEGKSVFIDRCNLDREQRVDFVNLGGSQIEVHAVVLDLPAQLC
IARSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFFRIMFCQSESDVQAAINTYSV
LGPLDTLPNGSFGQRKPDTKVQLGIMKFLKKVDVPPNAGSTSGSVQDSAFPQVSKERDTS
CKGPDNLSSLSTTAYKGVKESEDLPKHSIGPDVSPDSIPTLAFPSISTADFQFNIEKASD
VIVEKVEEYVKKVGNARLVLVDLSHGSKILSLVRAKAAQRNIDNKKFFTFVGDITRLYSQ
GGLRCNVIANAANWRLKPGGGGVNAAIFSAAGPALEVATKEQAASLLPGHAVVVPLPSNS
PLYNREGVSHIIHVLGPNMNPQRSNCLKDDYVKGCKVLRDAYTSLFDGFLSVLRNQANVT
SKNLVSEKSMKDTSCGDLKNHLENGDQKTKRDGDSVSERSKKSKGSHDDNSKIDGSTSKS
WTTWAQALYHIAMHPEKHKNVLLEVSDDVAVLNDLYPKAKKHLLILARYGGLDRLADVQQ
EHLHLLTTMHSVGLRWAEKFLQEDSSMIFRLGYHSVPSMRQLHLHVISQDFNSNHLKNKK
HWNSFNTAFFRDSVDVIEEIRNHGKATLKDESYLSMELRCHRCRSAHPNIPRLKSHISNC
QSPFPPSLLENGRLVPRQDENLSNS
NT seq 2238 nt   +upstreamnt  +downstreamnt
atggacatggattgcgatgatacttcaaaacacgaagagaaaagtggagaggagaagaga
aattcaatcgtggtgatcttggtgggtgcgccgggcagtggcaagtccactttctgcgag
cacgtcatgcgttcttctcctcgaccttgggctcgcatttgccaggatactattaataat
ggcaaagctggaacaaagccccaatgccttaagactgcggccagcgcattgaaggaaggt
aaaagtgtatttattgacagatgcaatctggacagagaacagcgtgtagattttgtgaat
ctcggtggttcacagatagaagtgcatgctgtggtgcttgatcttcctgctcagctttgt
atagctcgttctgtgaagcgcactgggcatgaaggaaatttacaaggtggaaaagctgct
gctgttgttaatagaatgctgcaaaagaaagaattgcctaagctttcagaagggttcttt
cgaatcatgttttgccaaagtgagagtgatgttcaagcagcaattaatacttacagtgtg
cttggtcctttggataccctcccaaatggttcttttggccagagaaaaccagacaccaaa
gttcagcttggcattatgaagttcttaaagaaagtagatgttcctcctaatgcaggttcc
acttcaggtagtgttcaggattctgcattcccacaagtcagcaaggaaagggatacttcc
tgcaaaggaccagataatttgtcatcattatcaactactgcttataagggggtaaaagaa
agtgaagatctgcctaagcactccattggcccagatgttagtcctgacagcattcccact
ctggcgtttccatctatttcaacagcagacttccagttcaacattgagaaggcatctgat
gtcattgttgaaaaagttgaagaatatgtgaaaaaagttggaaacgcaaggctggttctt
gtggacttgagtcatggatcaaagattttgtctttggtcagggctaaagctgcacaaagg
aacattgacaacaaaaagttcttcacatttgttggagacataactcgactatattcacaa
ggaggcttacgctgcaatgtaatagctaatgctgccaattggcgactgaaaccaggaggt
ggaggtgtgaatgctgcaattttcagtgctgcaggtccagccctagaggttgcaactaag
gaacaagcagcatctcttcttcctggacatgctgttgttgttcctcttccttcaaattct
cccttgtataacagggaaggggtatcccacatcatacatgtccttggcccaaatatgaat
ccacaaagatctaattgccttaaagatgactatgttaaaggctgcaaagttcttcgtgat
gcttacacatcactttttgatggttttctatctgtactgaggaaccaagcaaatgtaact
agtaaaaaccttgtatcagagaaatcaatgaaagatacctcatgtggtgaccttaaaaat
catttggaaaatggtgatcaaaaaactaagagagatggtgattctgtatctgagagaagc
aaaaaatccaagggatctcatgatgacaacagtaagattgatggaagcacttcaaagagc
tggaccacatgggctcaagctctttaccatattgctatgcatcctgagaagcataaaaac
gtgttgctggaagtatcagatgatgttgctgtactaaatgatctctaccctaaggcaaaa
aagcatctcctcatcttggcacgatatggaggtcttgatcgccttgctgatgtacagcaa
gaacaccttcatttgttaacaacaatgcatagtgtgggcttgagatgggctgaaaaattc
ttgcaggaggattcatcaatgatctttcggcttggttatcactcagtcccttctatgcga
cagcttcacttgcatgttatcagccaggatttcaattcaaaccatctgaagaacaagaaa
cactggaactctttcaatactgcctttttcagagattcagttgatgtaattgaagaaatc
aggaatcatggcaaagcaacccttaaagatgaaagctatttatcaatggagttgcgatgc
caccggtgtaggagtgcacaccctaatataccccggttgaaatcacatatcagcaactgt
caatccccctttcctccctccctacttgaaaatggacgtttagtgcctcgacaagatgaa
aatttgagtaattcctag

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