Manihot esculenta (cassava): 110623379
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Entry
110623379 CDS
T05761
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04120
Ubiquitin mediated proteolysis
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110623379
04120 Ubiquitin mediated proteolysis
110623379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mesc04121
]
110623379
Enzymes [BR:
mesc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110623379
Ubiquitin system [BR:
mesc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110623379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_Vps41
zf-RING_5
zf-RING_11
zf-RING_16
zf-C3HC4_4
U-box_ZFPL1
FlxA
zf-HC5HC2H
zf-RING-like
Prok-RING_4
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
110623379
NCBI-ProteinID:
XP_021623986
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Position
9:complement(32685336..32692903)
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AA seq
550 aa
AA seq
DB search
MVRLRTYVSLSLVATVAALYHAFSSRGQFYPAMVYLSTSKINLVLLLNMGLAIMCILWQL
TKWVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVAALLLIKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFLGFLLLLDSMFLYSSIKYLIETRQASVSLFFSFEYM
ILATTTVSTFIKYIFYVSDMLLEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFKLRVADFIRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKRLNCGHLFHVHCLRSWLERQHTCPTCRALVVPPENVTSAAGAQSGSQSDTHLQGTGT
TSTGLHGSVGSMPNNHLSQHQARLQAAAAAAAVYEKSFVYPSANTLAWSLGYTMLPCAQM
PLADAANGESSAEQALIGQSQRESAFPAGPSNLSLPQFSHYVFAPFQVPGANADHGDRLG
NMPNSELEAQKKLLQHQIEALQRQLQLLHQPRPEGSVHMDHPTPSSESKGKTVATSSSSS
DSGHCGESDV
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggtgcggcttcgtacatatgtgagcctcagtttggtggcaactgtagcagctctttat
catgcattcagtagtagaggccaattttacccagctatggtttatttgtcgacctctaag
atcaatttggtgcttctgcttaacatgggtctagccattatgtgcattttgtggcagtta
actaaatgggtattccttggttccctccgagaagctgaagttgaaaggttaaatgagcag
tcgtggagagaggttatggaaattctctttgctatcactattttcaggcaggacttctca
gtgacatttcttgctatggtcgcagctttattgttaatcaaggcattacattggttagct
caaaagagggttgagtacattgagacaaccccatcagtgcccatgctgtctcacattcgg
atagtttcatttctcggattcctccttctcctagacagtatgtttttgtacagttctatt
aagtatttgatagaaacacgtcaggcttcagtttctctcttcttctccttcgagtatatg
atactagcaacaacaacagtctctacttttataaaatatattttctacgttagtgacatg
ctattggaaggacaatgggaaagaaaagccgtttacaccttctacttggaacttattcga
gatttgcttcacttatccatgtacctctgcttcttccttgtgattttcatgaactatggt
gtaccgttgcacttaataagggagctctatgagacattcaggaatttcaaacttcgtgtt
gccgatttcattcgttaccgtaagatcacatcaaatatgaatgatcgttttccagatgca
acacctgaagagctcaatgcaagtgatgctacctgcattatttgccgggaagagatgacc
acagccaaaagattaaactgtggacatctctttcatgttcattgtcttcgttcatggttg
gagcggcaacatacttgtcctacatgcagagccctagttgtaccacctgagaatgtcaca
agtgcagctggagcacaaagtggatcacaatcagatactcacctgcaggggacaggcacc
acaagtacaggactgcatggctcagttggtagtatgccaaataatcatttgagccagcat
caagccaggctccaggctgctgctgctgctgctgctgtatatgagaaatctttcgtttac
ccttctgcaaatactctagcatggtctcttggatacaccatgcttccctgcgcacaaatg
cctttggctgatgctgccaatggagagtctagtgcagaacaagccttgataggacaatca
cagagagagtctgcattccctgctgggccttcaaacttgtcccttccgcaattttcccac
tatgtctttgcaccctttcaggttcctggtgccaatgcagatcatggagataggttgggc
aatatgccaaactcagagttggaagctcagaaaaagcttctccaacaccagatcgaggcc
ctgcaaaggcagctccaacttctacatcagccaaggcctgagggtagtgtgcatatggat
catccaacaccatcatcagaaagcaaaggtaagacagttgcaacttcttcatcctcatca
gactctggtcattgtggggagagtgatgtgtag
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