Manihot esculenta (cassava): 110623551
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Entry
110623551 CDS
T05761
Name
(RefSeq) protein CHROMATIN REMODELING 20 isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mesc03000
]
110623551
03036 Chromosome and associated proteins [BR:
mesc03036
]
110623551
Transcription factors [BR:
mesc03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
110623551
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110623551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
AAA_34
Motif
Other DBs
NCBI-GeneID:
110623551
NCBI-ProteinID:
XP_021624230
LinkDB
All DBs
Position
9:34458743..34474785
Genome browser
AA seq
1494 aa
AA seq
DB search
MEEKQEQVEDVESASSDSYIADSDVDEPSTSGQDDGMHLDEPLTELEIEDLVAEFLEVES
KAAEAQEALEKESLLKVESDVREELAQTLHGDDLETAVENEMSTFKEEWEAVLDELETES
AHLLEQLDGAGIELPSLYKWVESQAPNGCQTEAWKRRAHWVGSQVTSEITDVVADAEKYL
QSHRPVRRRHGKLLEEGASGFLEKKLSTDGTKGDVAENGDVDWDSLKKLFSGGLSKDIAS
FGSKHWAAVYLANTPQEAAEMGLRFPGVDEVEEIEDIDGSSSDPFIADAIENEKELILSE
EQRKNYRKVKEEDDARIDQKLQHHLKQRRRRKRSKQVMEGKAYGLSSPRDISDEKTHEHG
EDLPSENSKKDFCEISKNLDPEQAMSNGDSVFSEPDIIEARRSKRVNESEEPKIDAKKIR
PVIIDSDDEADAVMDQSVCNAGKVEDQSTLQENNGDSSDDSHLMHGVNGEFRCTACDRIA
VEVHSHPLMKVIVCEDCKSLIEEKMHMKDPDCSECYCGWCGQSNDLVSCKSCKTLFCATC
IKRNIGEDCLSKVQASGWQCCCCLPSQLQRLTSELEKAMESEDLMVSSSDSESENSDADT
GVAISKRKKKKKKKKKKKKIRRILDDAELGEETQRKIAIEKERQERLKSLKVEFTDKTKM
MSFASCNGDLPEGATVEVLGDAATGYIVNVVREKGEEAVRIPPSISAKLKAHQVAGIRFM
WENIVQSIGKVKSGDRGLGCILAHTMGLGKTFQVIAFLYIAMRSVDLGLRTALIVTPVNV
LHNWRHEFLKWKPSEVKPLRVFMLEDVSRDRRAELFAKWRTKGGVFLIGYTAFRNLSFGK
HVKDRNMAREICYALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNN
LMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTTNDVKIMNQRSHILYEQLKGF
VQRMDMSVVKKDLPPKTVFVIAVKLSPLQRKLYKRFLVVHGFTNDKVSNEKIRKSFFAGY
QALAQIWNHPGILQLRKDRDYVSREEAVENFIGDESSSDENVDYNNILGEKPRSANNFVH
GRRDGGFFLKDWWNDLLHENNYKELDYSGKMVLLLDILTVCSHVGDKALVFSQSIPTLDL
IEFYLSRLPRHGKRGKFWRKGKDWYRLDGRTESSERQKLVENFNDPVNKRVKCALISTRA
GSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLMAHGTMEEKIYKRQ
VTKEGLAARVVDRQQVHRTISREEMLHLFEFGDDENSDPLTDIGQEDGQADDCSMSGVGN
SLKQRVPLSHGSCSSDKLMESLLSRHHPRWIANYHEHETLLQENEEEKLTKEEQDMAWEV
YRRTLEWEEVQRVSLDESTFERKPPVPSVAPSAPDTSSLPTSSMTPPAPEASNSNVTPYK
SNFRNRMLQRKCTNLSHLLTLRSQGTKVGCTTVCGECAQEISWEDLNRDGRMAR
NT seq
4485 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaacaagagcaggttgaagatgttgagagtgcttctagtgattcttatatt
gctgattcagatgttgatgaaccatctacatcgggacaagatgatggaatgcatcttgat
gaacctttgactgagctggaaatagaagatctagttgctgagttcttggaagttgagagc
aaggctgcagaggctcaagaagcacttgaaaaggagtctcttttaaaagtggagagtgat
gtgagagaggagttggcacaaactcttcatggtgatgatctggagacagctgttgaaaat
gagatgtctactttcaaggaggagtgggaagctgtgcttgatgaactagagactgaaagt
gcccacttgttggaacaacttgatggtgccggtattgagttaccaagcttgtataagtgg
gttgaaagtcaggctccaaatggttgccagactgaagcttggaaaagaagggcacactgg
gtaggatctcaagtgaccagtgaaatcacagatgtagtagctgatgctgagaagtatctt
cagagtcacaggcctgtgagaagacggcatgggaaactattggaggagggtgctagtgga
tttctagagaaaaaactttctacagatggaacgaagggtgatgtggcagaaaatggagat
gtagattgggactctctcaagaaactattttcgggtggcctttctaaggacattgcttca
tttggtagcaagcattgggctgctgtctacctggccaacactcctcaggaagctgcagag
atgggactcagatttcctggagttgatgaggttgaggagattgaagacattgatggcagt
tctagtgatccattcattgctgatgccatagaaaatgaaaaggagctaattctttccgag
gagcagagaaaaaattatagaaaggtcaaagaggaagatgatgcaagaattgatcagaaa
cttcaacatcatttgaagcaaaggagacgtcgcaagagatctaaacaggtaatggaaggc
aaagcatatggtctgtcatctccacgtgatatttcagatgagaaaactcatgaacatggg
gaagatttgccaagtgaaaactcaaagaaagatttttgtgaaatttctaagaacttggat
ccagaacaagcaatgagtaatggtgattcagtgttttctgagcctgatatcattgaagcc
agaaggtccaagcgtgtgaatgaaagtgaggagccaaaaattgatgccaaaaagatacgg
cctgtcatcatagacagtgatgatgaagctgatgctgtgatggatcaatcagtttgcaat
gccggtaaagtggaggatcaatccactttgcaagaaaacaatggggactctagtgatgat
agccatcttatgcatggggtgaatggagagtttcggtgtactgcatgcgatagaattgct
gtggaagtgcactcacatccacttatgaaagtaattgtttgtgaggattgcaaaagctta
atagaggagaagatgcacatgaaggatcctgattgttctgaatgctattgtggatggtgt
ggacaaagcaatgacttggtaagttgcaagtcatgcaaaacattattctgtgccacttgt
ataaagaggaatattggtgaagattgcttgtccaaggtacaagcttctgggtggcaatgt
tgttgttgcttgccaagtcaactacaaagattgacgtcagaattggagaaagccatggaa
tccgaggatctgatggtttcaagctctgatagtgaatcagaaaactcagatgcagatacc
ggtgttgcaatcagtaagagaaagaagaagaagaagaagaagaagaagaagaagaagata
cgaaggatccttgacgacgctgaattaggagaagagacccaaaggaaaattgcaatcgaa
aaggaacgtcaagaacgtctcaagtcgctgaaagtagagtttactgacaaaaccaagatg
atgagctttgcaagctgcaatggcgacttacctgaaggtgcaactgttgaagtacttggt
gatgctgcgacaggttatatagtgaatgttgtgcgggaaaaaggtgaagaggctgtgagg
attcccccaagcatttcagccaaattgaaagcccatcaggtggcagggataagattcatg
tgggagaatatagttcagtcaattgggaaagtgaaatctggagatagaggtcttggttgc
attttggctcatacaatgggtctgggtaaaacttttcaggttatagcgttcctgtacatt
gccatgagaagtgttgatttgggattaagaactgcacttattgttactcctgtgaatgta
cttcataactggcggcatgaattcttgaaatggaagccctcagaagtaaagccccttcgt
gttttcatgctggaagatgtttcaagggacagaagagcagaattgtttgcaaaatggaga
actaagggtggggtttttcttattggctacactgcttttcgaaacttatcttttggaaag
catgtaaaggatcgtaatatggctagggaaatttgttatgctttacaggatggacccgat
atacttgtttgtgatgaagcccatatgattaagaacaccagggcagatacaacccaagca
ttgaaacaagtgaaatgccagagaaggattgcattaactggatcacctcttcaaaacaat
ctaatggagtattactgcatggttgattttgtaagagaaggttttcttggcagcagccat
gagtttagaaaccggttccagaatcccatagagaatgggcagcatactaattcaacaacc
aatgatgtgaaaattatgaatcagaggtcccatatcctttatgaacaattgaaaggattt
gtccaaagaatggacatgagtgtcgtgaagaaggacttgccacctaaaactgtttttgta
atagccgtaaagctctccccattgcagaggaaattatacaagaggttccttgtcgtgcat
ggattcacaaatgataaggtttccaatgaaaagattaggaagagcttttttgctggatac
caggcattggctcagatatggaatcatcctgggattctgcaactgaggaaagatagagat
tacgttagtcgtgaggaagctgttgagaattttattggagatgaaagttctagtgatgaa
aatgtagattacaacaatattcttggagagaagccaaggagtgcaaataattttgtgcat
gggagacgcgatggtggattttttcttaaggattggtggaatgatcttcttcatgaaaat
aattataaagagcttgattacagtggcaaaatggtattgctgcttgacattttaaccgta
tgttctcatgtgggtgataaggcattggtttttagccagagcattcccactttagacctc
atagaattttatctttcaagattgccacggcatggaaaaaggggaaagttctggaggaaa
ggaaaggattggtacaggctagatggaagaacagagagttctgaaaggcaaaaattagtt
gagaacttcaatgatcccgtgaacaaaagagtcaaatgtgctctgatttcaacaagagct
ggatctctggggattaatcttcatgctgcaaaccgtgtagttattgttgatggttcatgg
aatccaacatatgaccttcaggccatttatagagcttggaggtatggccagaaaaagcca
gtgtttgcttatagattgatggcacatggaactatggaagaaaaaatctacaagcgtcag
gtgacaaaggagggacttgctgcaagggtagttgatagacaacaagtacacaggaccatt
tctagagaagaaatgttgcatctttttgaatttggtgatgatgagaattctgaccctcta
actgacattgggcaagaggatggacaagcagatgactgcagcatgagcggagtgggaaat
tcactgaaacagagggttcccctttctcatggcagctgctcttctgacaagttaatggag
agcttacttagcaggcatcatccaaggtggattgccaattaccatgagcatgagacactc
ctgcaagagaatgaagaggaaaaacttaccaaggaagagcaagacatggcttgggaagta
tataggagaacgttagaatgggaagaagtgcagcgagtttctcttgatgaatccacattc
gagcgaaagcctcccgtgccaagtgttgctccttctgcaccagatacaagcagcttacct
acatcaagcatgacgcctcctgcacctgaggcttccaattccaacgttacaccttacaag
agcaattttaggaatcgcatgttgcagagaaaatgtactaacctttcccacttgcttacc
ctcagaagtcagggcacaaaagttggttgcactactgtatgtggggaatgcgcccaggag
ataagctgggaggatctgaacagggatggcagaatggcacgatga
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