Manihot esculenta (cassava): 110623687
Help
Entry
110623687 CDS
T05761
Name
(RefSeq) RNA polymerase sigma factor sigA isoform X2
KO
K03086
RNA polymerase primary sigma factor
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110623687
Transcription machinery [BR:
mesc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
110623687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r4_2
HTH_36
HTH_24
Motif
Other DBs
NCBI-GeneID:
110623687
NCBI-ProteinID:
XP_021624392
LinkDB
All DBs
Position
9:complement(33240004..33244465)
Genome browser
AA seq
509 aa
AA seq
DB search
MMTTAAVIGLSAGKRLLSSSFYYSDLTDKLFNVNDHGLTHYQIASTKNVIGAKKSSNYGP
TYPSSNRNTQSIKALKEHVDTASSSSTTETRFKTFHDIEEDISDLDYSVEALLLLQKSML
EKQWNLSFERTASSDSTNRKSEKKIPVTCSGLSARQRRINTRRKNLGQNKATVQASTFKQ
LQSAVSPELLQNRLKGYVKGVVSEELLTHAEVVRLSRIIKAGLSLEDHKSRLKERLGCEP
SDEQLATSLRISRAELQSKLIACSLAREKLAMSNVRLVMSIAQRYDHMGAEMADLVQGGL
IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR
LEEKGVTPSIDRIAESLKMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
CLDNNPWHVVDEWALKDEVNRLIDLTLREREREIIRLYYGLDNESLTWEDISKRIGLSRE
RVRQVGLVALEKLKHAARKKKLEAMLVKH
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccactgctgcagttattggacttagtgcaggaaagaggctattgagttcctca
ttttattattctgaccttacagataagcttttcaatgtcaatgatcatggattaacacac
taccaaattgcttcaacaaagaatgtcataggtgcaaaaaagtcatcaaattatggcccc
acttacccatcctccaatagaaatacacagtctattaaggctcttaaagagcatgtggat
acagcctcttcttcttcaactacagaaacaaggttcaagacattccatgacatagaagag
gacatttctgatcttgattattctgtagaggcacttcttttgttgcagaagtctatgctt
gagaaacagtggaatctctcatttgagaggacagcctcaagtgactcaaccaataggaaa
agtgaaaagaagatacctgttacttgctctgggttgtcagctcgacaacggagaataaat
actaggaggaagaatctgggccagaataaagccacagtgcaagctagtacatttaagcag
ctacaatcagccgtgagtcctgagctgctgcagaatcgtttgaagggttatgttaagggt
gttgtaagtgaagagctgctcacacatgcagaagtagtgcgcctttcgaggataataaaa
gctggtctttccttggaggatcataaatccaggctgaaggagagattaggatgtgagccc
tctgatgaacaactagcaacttccttgaggatttctcgtgcagagttacagtccaaattg
attgcttgttctttggcaagagagaaactagcaatgagcaatgttcgtctagttatgtca
attgctcaaagatatgatcacatgggtgctgaaatggctgaccttgttcagggaggtttg
attggactattgcgtggtattgagaaatttgattcttcaaaaggattcaaaatttcaact
tatgtttattggtggatccgtcagggagtgtcaagagcattagttgacaattcgagaacc
ttgagactgcctaatcatttacacgaaaggttaggcttaatacgaaatgcaaaaatcaga
ctggaagagaaaggagtaactccttcaattgataggattgcagagtccctgaaaatgtcc
cagaaaaaagttaggaatgcaacagaggcaattagcaaggtcttttcacttgatagggaa
gcattcccctctttgaatggtctacctggagaaactcaccatagttacattgcagataat
tgccttgacaacaacccatggcatgtagtagatgaatgggcacttaaggatgaagtaaac
aggcttatcgacttgacccttcgagaacgagaaagggagattataagactttactatggt
ttggataatgaatcccttacatgggaggacattagtaagcggataggtttgtccagagaa
agagttcggcaagtcgggcttgttgcactagagaaattaaaacatgctgcaaggaagaag
aagctggaggccatgctagtgaaacattga
DBGET
integrated database retrieval system
