Manihot esculenta (cassava): 110623695
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Entry
110623695 CDS
T05761
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110623695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110623695
Enzymes [BR:
mesc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110623695
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110623695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110623695
NCBI-ProteinID:
XP_021624404
LinkDB
All DBs
Position
9:6186352..6204169
Genome browser
AA seq
1707 aa
AA seq
DB search
MATTEGTTESIDSITFSFLTDEEVRNHSFVKISNPRLLDLVERPIPGGLYDPALGPLSER
TTCKVCGQRSTNCPGHCGHIDLISPVYNPLLFGFLHKLLQRTCFFCYHFRVQRGQVEKCV
KQLELIVKGDIVGAKRLDSVSLNEALYPEETDGSSESCSTIHSGAQHHNVEHMKQQGWTS
LQLSEAMSVFNSFLKPKFKKCKNCERANPNITKPTFGWFHTSGMSDASIRANVIRAKKLG
GPLNGESEGVMDVEDPAAPPENQDTSRKRHKQKGGQEVLEFIKQKSVFSRQLLPTEVKDV
LELLWENEARLCSFITDLQQQGFEKKKAGPSMFFLETILVPPIKFRPPTKGGDSVMEHPQ
TVLLSKILQSNISLGDAHINKEHSKVVRRWMELQQSINMLFDSKTAKGTGQRDVASGICQ
LLEKKEGLFRQKMMGKRVNYACRSVISPDPYLGVNEIGIPPCFAVKLTYPERVTPWNIAK
LRNAVINGSESHPGATHYVDKLSINKLPPARKARISISRKLPSSRGAVTEPGKSSDCGYE
GKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEM
NVHFPQDEVSRAEAYNIVNANNQYVRPSNGEPLRALIQDHIISSVLLTKKDTFLRQDEFT
QLLYSTGVSTSAPTTFHGRPGQKVLWSQSEDEIDTIQPAIWKPEPLWTGKQVITAVLNHI
TKGHPPFTVEKDAKIPYNFFKSRANDYKPCKEKKSGGRGKKSGEDKDHKSVGDTLEKKEL
GEEKLFIYRNELVRGVIDKAQFGEYGLVHTVHELFGSNTAGILLSVLSRLFTAYLQMHGF
TCGVDDLLILKAQDNERKKQLESCEKSGELVHRNFIGIEDENLNIDPVELQLKIENTIRS
RDEDSGLSYLDRLMSNELNTKTSSGVIDKLLSDGLVKPSVKNCISLMTTSGAKGSKVNFQ
QISSFLGQQELEGKRVPRMVSGKTLPCFPPWDWAARAGGYIIDRFLTGLRPQEYYFHCMA
GREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVIQFFYGEDGVDVHQTG
FIAKFKELALNQDMIHKRCGGQLGTFNTYISGLPIALKDKADKFFDDFPLIGRVASNLVK
REDLYNLIKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRL
QEILMTASSDIKTPIMTCPLQMGQTKESAEYLADKLKKITVAEVIESMEVSLLPLATQDS
DCCRIYKLEMKLYIPAHYPKYANMSVEDWEETLEVAFVRELEDAIQNHMLLLSRISGIKN
FLPDSQSRASNEADEDGSGERSHKAENDDDDEEEDDGEKAEDLGLDAEKRKVRATDEMDY
DDGFEDHLNEVESIASEESSGFESEIDQGDNEIDIRKDAVLDNEASESPLQGKPSKPKSK
IVAPETPSRGESHSEPKSRDKKKKQKAKRSKGPKLVKKDYDRAIYVETRNMHFEVHFKFT
NEPHILLAEIAKNSAKKVYIQNPGKIEQCRVTDCKENQVIYYGENPKERVDIEPKEKEKF
PALHVTGVDFNAFWQLQDHLDVRYLYSNNIHAMLRTYGVEAARETLIREINHVFKSYGIS
VSTRHLSLIADFMTHSGGYRSMSRLGGIAESVSPFSKMSFETASKFIVEAALHGETDELE
TPSARICLGLPVKMGTGSFDLMQKLEI
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacggagggtacaactgagtccattgattccataaccttcagtttcttaaca
gatgaggaggtcagaaaccatagttttgtaaagatctcaaaccccagattgcttgatctc
gtggagaggcctataccaggcgggctatatgatccagcactggggccactaagtgagagg
acaacttgcaaggtatgtggtcagcggtcaaccaattgccctggccattgcggccacatt
gatcttatttctccagtttacaacccactgctctttggttttcttcataaacttctgcaa
aggacctgcttcttttgctatcattttagagtacagaggggccaggttgagaaatgtgta
aaacaactggaactcatagtgaaaggtgatattgttggggctaagagattagattcagtc
tcactaaatgaagccttgtatccggaggaaactgatggtagttctgaatcttgttctaca
attcattctggagcacagcatcacaatgttgagcacatgaagcagcaaggatggacatct
cttcaactttctgaagcaatgtctgtttttaatagtttcctgaagccaaaatttaagaag
tgtaagaactgtgagagggcaaatcctaatattaccaaacctacttttggatggttccac
acgagtggtatgtcagatgccagtattagagcaaatgtgattagagccaaaaagctagga
gggccattaaatggggaaagtgaaggggtgatggatgtggaggatccagctgctcctcca
gaaaaccaagatactagtcggaagaggcataagcaaaaaggtgggcaagaggtccttgag
ttcattaagcagaaaagtgttttctctaggcagcttctaccaacagaggttaaagatgta
ttagagcttttatgggaaaatgaggcacgtctctgttcgtttataactgatcttcagcag
caagggtttgaaaagaaaaaagcggggccctccatgttttttttggagaccattttggta
cctcccatcaaattccggccaccaacaaaaggaggtgattctgtaatggagcatcctcaa
actgttttgttaagtaagattctgcaatccaatatatctttgggagatgctcacattaac
aaagaacattcaaaagtagttagacgatggatggaacttcagcaatctataaacatgtta
tttgatagcaaaactgccaagggcaccggtcaaagggatgtggcttctggaatatgtcag
ttgcttgagaagaaggaaggtttatttcgccaaaagatgatgggaaagagggttaattat
gcatgtcgatctgttatctccccagatccctatttaggtgttaatgaaattggaattcct
ccgtgctttgcagtaaagttaacttatcctgagagagtgactccctggaatattgccaag
ttgaggaatgctgtgatcaatggatctgaaagtcaccctggtgctacacactatgttgat
aagttgtcgattaacaaactaccacctgcccggaaagcacggatttccatttcacggaaa
ttaccttcctcacggggagctgttacagaaccagggaagagttctgattgtggatatgaa
ggcaagatcgtatatcgccatttgcaagatggagatgttgttcttgtcaatcgacagcct
acacttcataaacccagtataatggcacatgttgttcgtgtattgaagggggagaagacg
cttcgtatgcactatgcaaattgcagtacatacaatgctgattttgatggtgatgaaatg
aatgttcatttcccacaagatgaagtttctcgtgctgaagcatacaacattgtcaatgca
aataatcagtatgtcaggccttccaatggtgaacctcttagagccttgattcaggaccat
attatcagttcggtacttcttacgaagaaggatacttttttaagacaagatgaatttact
caattactttatagtactggggtgtccacttctgcaccaaccactttccatggtagacct
gggcaaaaagttctatggtcacaatccgaagatgagattgacaccattcaacccgccata
tggaaaccagagcctctttggacaggaaaacaggtcattactgctgtgttaaatcacatc
acaaagggtcatccaccctttacagtagaaaaagatgcgaaaattccatataactttttc
aagagtagagccaatgactataagccctgcaaggaaaagaaatctggtggaaggggaaag
aagtcgggtgaagataaggaccacaaatctgttggagacactcttgaaaaaaaggagctt
ggagaagagaagttgtttatttacaggaatgaattggttcggggtgtgattgacaaggct
cagtttggtgaatatggtttggtgcatacagttcatgaactctttggctcaaatactgca
ggcattttactctctgtattaagtcgtttgttcactgcttatttgcagatgcatgggttc
acttgtggagtggatgatcttttgatattgaaagctcaagataatgaaaggaagaagcaa
cttgaaagctgtgaaaagagtggcgaattagttcatcgtaatttcattggaattgaggat
gaaaaccttaatatagatcctgtggaattgcaattgaagattgaaaatactattcgctcc
cgtgatgaagattctggcttatcttatttggataggctgatgagtaatgagcttaatacc
aaaacaagctcgggggtcattgataagttgttgtctgatggcttagtaaaaccatctgta
aagaattgcatctctctaatgactacatctggtgctaaaggtagcaaggtgaatttccaa
caaatttcttcttttttgggacaacaagaattggaagggaaaagagtccctcgaatggtg
tctggaaagaccttaccctgctttcctccatgggattgggcagctcgtgctggaggctat
attattgatcgttttcttactggtcttcgtccccaagaatattattttcattgcatggct
ggtcgtgaagggcttgttgatacagcagtcaaaacatctcgtagtggatacctacaaaga
tgcctgattaaaaatctcgagtgtctgaaaattggctatgatcatacagttcgtgatgct
gatggatcagtcattcaatttttctatggagaagatggtgtggatgttcatcaaacaggc
tttattgcaaaattcaaagaattagcactgaatcaagacatgattcacaaaagatgtggt
ggtcagcttggcacgtttaatacttacatttcgggattgcctattgctcttaaagataaa
gcagataaattctttgatgattttcctctaattgggcgagtggcttccaatttggtgaag
cgtgaggatttatataatttaataaagcagaagttcctcttgagccttgcacagcctgga
gaaccagttggtgtgctagctgctcagtctgtaggagaaccatcaacacagatgacgttg
aatactttccatctggctgggcgaggtgaaatgaatgtcacacttggaattcctcgtctg
caggagatcctgatgactgcctcaagtgatattaagactccaataatgacctgtcctctg
caaatggggcaaacaaaggaaagtgcagagtatcttgcggataaattgaagaagatcact
gtggcagaagtaatagagagcatggaagtgtctctattgccacttgctactcaggacagt
gattgttgcagaatttataagcttgaaatgaagctttatatacctgcacattacccaaaa
tatgccaatatgtccgtagaagactgggaagaaaccttagaggtggcttttgtaagggag
ttggaggatgctatacaaaatcacatgcttttgctttctagaattagcggcatcaaaaat
tttttgccagattcacagtctagggcttcaaatgaggcagatgaagatggttctggggag
aggtcacacaaggcagaaaatgatgatgatgatgaggaggaggacgatggtgaaaaggct
gaggatcttggtttagatgctgagaaaagaaaggttcgagctacagatgagatggattat
gatgatggctttgaggatcatctgaatgaagtggagtccatagccagtgaagagtcttct
ggatttgaaagtgaaattgatcaaggtgacaatgagattgacattcgtaaggatgctgtg
cttgacaatgaagcttctgaaagtcctctgcagggaaagccctctaagcccaagtcaaag
attgtagcccctgagaccccatctcgtggtgaaagccattctgaacccaaatcaagggat
aagaagaaaaaacaaaaagccaaacgcagtaaagggccaaaattggtgaaaaaggactat
gatagagcaatctatgtggaaaccaggaatatgcactttgaggtccactttaaattcacc
aatgagcctcatattttgctggctgagattgcaaagaattcggcgaagaaggtttatatc
caaaaccctgggaagattgagcaatgtcgagtgactgattgcaaagaaaatcaagtgatt
tactacggggagaatccaaaggagagggtcgatattgagcctaaagaaaaagaaaagttt
cctgcactgcatgtaactggagtggattttaatgctttctggcaattgcaagatcacttg
gatgtaaggtatctatattccaataacattcatgctatgctaagaacttacggagtggaa
gctgcgagggaaacccttattagagagataaatcatgtattcaagtcttatggtatctct
gtcagtactcgacatttgtcgcttattgctgattttatgactcattctggcggatatcgt
tcaatgagccgccttggggggatagcggaatccgtgtcgccttttagtaaaatgtctttt
gagacggcttctaaattcattgttgaagcagcactgcatggcgaaactgacgagttagag
actccgtctgctcggatatgtcttggattgcctgtgaaaatgggtactggttcttttgac
ttgatgcaaaaacttgaaatttga
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integrated database retrieval system
