Manihot esculenta (cassava): 110623989
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Entry
110623989 CDS
T05761
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03440
Homologous recombination
mesc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110623989
03460 Fanconi anemia pathway
110623989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mesc03032
]
110623989
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110623989
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
110623989
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
110623989
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
110623989
Bloom's syndrome complex (BTR)
110623989
FA (Fanconi anemia) pathway
110623989
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HHH
Motif
Other DBs
NCBI-GeneID:
110623989
NCBI-ProteinID:
XP_021624716
LinkDB
All DBs
Position
10:28987214..28998138
Genome browser
AA seq
1230 aa
AA seq
DB search
MRKNLSNSGQDNKCNEKLPEVNWSQHANAHDNFSSQKKFLSSNFLFSLEGQKPCIEGSMA
MRLTCCQIQSLQRLQSQEVEKAWHTLCTLQISCRNYLQPGKTGPLKNARNDSLQDVGKPT
LHSSSNRRKDSEDMHANQNFRDSSLRNNESTRYTGNVFPQDNARAAEAGSDMGRQNNIKG
SAINNTQSKAFVGLMSNHIVHTKQSKESPEALADFIDDDDLLGNIDVDQIVMEHYQSTST
PQPSVSKFPPITPTADKNNFMRSEETFLPSELCQNCNHGFKLGLCPEAANHLQEMKDMLI
SVSNELLDNTANLSPAQIEKLRQDRLQLNKQIQQLEKYLCDGERQNSHFSASTATRNFQY
ETPQSAACRIDPPRFNAQFQLPNGPGGHENWNLPSVSFSSVDRFGLSSGPVDREPYIPKF
IEVNYIEGSNDPKWSSTNFSWTKKLEAYNKKVFGNHSFRPNQREVINASMSGFDVFVLMP
TGGGKSLTYQLPALISPGITLVISPLVSLIQDQIMHLLQANISATYLSANMDWTEQQEIL
RELCSDYCKYKLLYVTPEKVAKSDVLLRHLDSLNARGLLARIVIDEAHCVSQWGHDFRPD
YKELGILKKKFGKTPVLALTATATASVKEDVVQALGLVDCIVFRQSFNRPNLWYSVIPKT
KKCLDDIDQFIKGNHFDECGIIYCLSRMDCEKVAKKLQECGHKAAFYHGNMDSAQRAYIQ
KQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLY
YSYSDYIRVKHMIIQGQIEQNPWTPGYNRTNMTNSERVLEKNTENVLRMVSYCENDVDCR
RLLQLLHFGEKFDSGNCKKTCDNCSKIKTLVEKDVTEIAKQLVELVKLTGQQFSSSHILE
VYRGSLNQYVKRYKHETLSLHGAGKHLAKGEASRILRHLVTEDFLVEDVKKSDIYGSVSS
VLKVNESKAYNLCSSGQTIVLRFPSAVKVSKLSKYDATPAKGTLTYGEQSPLVDAPAQPQ
SEVDLSLSAKLYSALRMLRTILVKEAGDGVMAYHIFGNATLQHLCKRIPRTKEELLEING
IGKAKVSKYGDRLLETIESTIREHHNTDKNSSGSNDSTDSIKRRRDATRAAKLNVEEEDD
FTKSTGRSKKRAAKLQNKDTEVYNARETDQNQCLDDDLDFEDSCYDHETNGSAVEADKNG
TGRVLPSWSTPGNKIKSSNHNLFQEYAMNS
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaaatctaagcaattcaggtcaagataacaaatgtaatgagaagcttcctgaa
gttaattggtcccaacatgccaacgcacatgataacttttcatctcagaaaaagtttttg
agttcaaattttcttttttcactagaaggtcagaaaccttgtattgaaggttcaatggct
atgaggttaacatgctgtcagattcagagtttgcaaagattgcagagtcaagaagttgaa
aaggcttggcacactctttgtactcttcagatttcttgcaggaactacttacagcctggg
aaaactggcccccttaagaatgcaaggaatgactctttacaggatgttggaaaacctacc
ttacatagctcatctaacagaaggaaagactctgaagacatgcatgcaaatcaaaacttt
agggattccagtttgaggaataatgaatcaactaggtatactggcaatgtatttcctcaa
gacaatgctagagctgctgaagctggaagtgatatggggaggcaaaataacattaaagga
tcagcaattaacaatactcagtctaaagcatttgttggtttgatgagcaatcacattgtg
catactaaacaaagtaaagaatctccagaagctctggctgattttattgatgatgatgat
ctacttgggaacattgatgtggaccaaatagtaatggagcattaccagtctaccagcaca
cctcaaccatcagtttccaagtttccacccataacaccaacagcagataaaaataatttt
atgagatcagaggagacatttttgccatctgaattgtgccaaaactgcaaccatggattt
aagctaggactttgcccagaagctgcaaatcatttacaagaaatgaaggacatgctaatt
tctgtatcaaatgaactacttgacaatactgccaacctaagtccagcgcagatagagaag
cttcgccaagataggttgcagctgaacaagcaaattcaacagcttgagaaatatctgtgt
gatggggaaaggcaaaattcacatttttctgcttccacagcaactcggaatttccaatat
gaaacaccacaatctgctgcttgcagaatagatcctccaagatttaatgcacaatttcag
cttccaaatggacctggtggtcatgaaaattggaatttgccatcagtttcattctcttct
gtagataggtttggtctatcatctggtcctgtggacagggagccttacattccaaaattc
attgaagttaactatattgaaggttcaaatgatccaaagtggagcagtacaaatttctct
tggacaaaaaagttggaggcctacaacaagaaagtgtttggaaatcactcatttcggcct
aatcagagagaggtcatcaatgcttcaatgagtggatttgatgtttttgttttaatgcca
actggaggtggaaagagcctgacataccagctgcctgctctaatttctccaggaataacc
ttggtaatttcacctcttgtgtcacttattcaagatcaaataatgcatctcctgcaggca
aatatatctgctacttacttaagtgccaatatggattggactgaacaacaggagatctta
agggaactttgttctgattactgtaaatataagttgttatatgtcacaccagagaaagtt
gccaaaagtgatgttcttttgcgacatttggacagtttaaatgctcgtggcttgcttgct
aggattgttattgatgaagctcactgtgtgagtcagtggggacatgattttagaccagac
tacaaggaacttggtatcttgaaaaagaagtttgggaaaactcctgttctagctttaaca
gctactgcaacagccagtgtaaaggaagatgttgtacaagctcttggtcttgttgactgc
attgttttccggcaaagttttaatcgcccaaatttatggtattctgtcatccccaagaca
aagaagtgtttggatgatattgaccagttcattaaaggaaaccattttgatgaatgtggg
attatttattgtctttcaagaatggactgtgaaaaggttgctaaaaaattgcaggaatgt
gggcataaagcagcgttttaccacggtaacatggattctgcacaacgtgcctacattcag
aagcagtggagcaaagatgaaattaatataatttgcgctacagtggcttttggaatgggt
atcaacaaaccggatgttcgctttgtaattcatcattctctccccaaatctattgaaggt
taccaccaggagtgtggtcgtgctggtcgagatggtcagcgctcatcttgtgttttgtat
tacagttacagtgactatatacgagtcaagcatatgattatacaaggacagatagagcaa
aatccatggactcctggatataaccgtactaatatgacaaattcagagagggtactggag
aaaaatactgaaaatgttctgcgaatggtcagttactgtgaaaatgatgttgactgtaga
cgtctccttcaacttctacattttggagagaaatttgattccggaaactgcaaaaaaaca
tgtgataattgttccaagatcaaaactttagtggagaaggatgttactgagattgcaaag
caattggttgaactggtcaagttaacagggcaacagttttcatcatctcatattttagaa
gtctacaggggatccttaaaccaatacgtcaagagatacaaacatgagactttgagcctg
catggtgctggaaaacatctggctaagggtgaagcttcccgaatattgcgtcaccttgtt
actgaggattttcttgtggaggatgtcaagaaaagtgatatttatggatctgtttcatca
gtattgaaggtgaatgaatccaaggcttacaatttatgctccagtgggcagactattgta
ttaagattcccgtcagctgtaaaggtatctaaactgagcaaatatgatgcaactcctgca
aaaggcacactgacatatggggaacaaagtccacttgttgatgctcctgcacaacctcaa
tctgaagtggatttgagtctatctgctaaactatattctgcgttacggatgctccgaact
atccttgttaaagaagctggggatggggttatggcataccacatatttggcaatgccaca
ctgcagcacctctgtaaaagaattcccagaactaaagaagagctacttgagataaatggc
attggaaaggccaaggtaagtaagtatggagatcgtttgctggaaacaattgaatctact
atcagggaacaccataacacagataagaatagcagtggtagcaatgacagcactgattcg
ataaagaggagaagagatgcaactagggcagcaaaattgaatgtggaagaggaggatgat
ttcaccaaaagtactggtcggtcaaagaaaagggcagcaaagttgcagaacaaagacacg
gaggtttataatgccagggagacagatcagaaccaatgcctcgatgatgacctagatttt
gaggattcatgttatgatcatgaaactaatggctcggctgtagaggctgacaagaatggt
acaggaagagttcttccttcatggtcaaccccaggaaacaagataaaaagttcaaaccat
aatttgtttcaagaatatgctatgaacagctaa
DBGET
integrated database retrieval system
