Manihot esculenta (cassava): 110624077
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Entry
110624077 CDS
T05761
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110624077
09123 Folding, sorting and degradation
03018 RNA degradation
110624077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110624077
03041 Spliceosome [BR:
mesc03041
]
110624077
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110624077
mRNA degradation factors
5'-3' decay
Lsm complex
110624077
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110624077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
DUF150_C
Motif
Other DBs
NCBI-GeneID:
110624077
NCBI-ProteinID:
XP_021624845
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Position
10:complement(31322952..31326311)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEYLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFMQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaggaaagaaacggtgttggatttggcaaaatttgtggacaaaggtgtccaa
gtcaagctcactggtggtagacaagtgacagggactttgaaagggtatgatcaactgtta
aaccttgtcctggatgaagctgtcgaatacctaagagatcctgatgatcctctgaagact
actgatcagaccaggcgccttggcctaatagtttgcaggggaactgctgtaatgcttgtc
tcaccaactgatggtactgatgaaattgccaaccctttcatgcagccagatggggcctag
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