Manihot esculenta (cassava): 110624192
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Entry
110624192 CDS
T05761
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110624192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110624192
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110624192
mRNA degradation factors
5'-3' decay
Decapping complex
110624192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WDR55
WD40_Prp19
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_HPS5
DUF4197
DUF445
Motif
Other DBs
NCBI-GeneID:
110624192
NCBI-ProteinID:
XP_021625003
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All DBs
Position
1:2251135..2263010
Genome browser
AA seq
1374 aa
AA seq
DB search
MASPNQQTPQFDMHKFFMPTTTATIQNPSPNLMIPPTSIPSSSYPPLTGTHSNFRFQFPQ
QFHHAPSFPLPNDNHHHHHPSPPAISNMPQRSMSYPTPSLQPQPQQHQQQHRNPSPRKNN
ERSGAEIMALLRPPPSPPLNQEPSPQPPQLLQHQHTPEFSNNIPPVGPIRMPSSKMPKGR
RILGDHVVYDVDVRLQGEVQPQLEVTPITKYTSDPQLCLGRQIAVNKSYICYGLKQGNIR
ILNINTALRSLFRTQSQRVTDMAFFAEDVHLLASAGLDGRINVWKISEGPDEEEKPQITG
KTVIAVQIVGEGEIKNPRVCWHCYKQEILVAGVGKHVLRIDTNRVGKNGVYSSDVPLQIP
VDKLIDGIQLVGKHEGEVTDLSMCQWMTTRLVSASMDGTIKIWEDLKAVPLVVLRPHDGL
PVYSSTFLTATNRPDHITLITAGPQNRELKIWVSDKEEGWLLPSDADSLTCTQTLELKSS
AEPQVDEAFFNQVVALSQVGLLLLANAKRNAIYVLHLDYGSNPAATHMDYISEFTVTMPI
LSLTGTSDVLHGQYVAQIYCVQTQAIQQYTLDLCQCLPPLLADVGSEKSEPNISHDLANT
EGVPPLDSSGNKFSDIPTSSASVGAAILRDISSSDIDSKPLVFTPSISDAEIACVTSSPL
SLTHKGFTEVTVAAGLEPGLPPGDQSSNQAVIDYLVDQQMDTIHANLSDVHSLDGDVRTD
EIKGTRDESSSILNPSIIFKHPTHLITPSEILMGASSPSNNSNNNEVKAEFEANIQDVVN
NDVNNAEVEVKVVGDTKSTHNDEFGLRGETKHLISEKKEKYFCSQASDLGIEMAKDCCSI
SAETHTMEESQQVDGVDVAKFLAQPAHTSEEEVDDSTKDTSGKSSESSMPAIVQQSTSPN
MKGKKQKGKNSQASGPSSLSPSASNSTDSSNEPAGTSSLPSLDAAFPQIFAMQEMLNQLV
TTQKEMQKQMSNMVAVPVSKECRRLEAALGRSIEKAVKTNSDALWAHIQEENAKNEKLLR
DRTQQITSMISNFVNKDLTAVLEKAVKKELASVGPAVARTVSPVIEKTISSAIAESFQRG
IGDKAVNQLEKSVNSKLEATVARQIQAQFQISGKQALQDALKAGLEASVVPAFEMSCKAM
FEQVDSTFRKGMVEHTTAAKQHFESAHSSLALALREAINSASSLTQTLSGELAESQRKLV
ALVAAGANSGSVNPMVTQLSNGPLAGLREKVETHVDPTKDLSRLISEHKYDEAFTIALQR
SEVSIVSWLCSQVDLRGILAMVPLPLSQGVLLSLLQQLACDAGKDTARKLTWMTDVAAAI
NPEDEMIAVHVRPIFEQVTHILHHQRSSPTITGPELATIRVLMHVINSVLVTYK
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcatccccaaatcaacaaaccccacagtttgatatgcacaaattcttcatgcccaca
accacggcaacaatccaaaacccttctcccaatctcatgattcctccgacctcaatccct
tcttcttcgtatcctcctcttaccggtacccactccaacttccgcttccaattccctcag
caattccaccacgccccctcgtttccgttgcccaatgacaaccaccaccaccaccaccct
tctcctcctgctatctctaacatgccacagcgttctatgtcatatcctacaccgtctctt
caacctcagccccaacagcaccagcagcagcaccgaaacccttctcctcgcaagaataat
gagcgtagtggggctgaaataatggccctcctccgcccacccccttctccgccgcttaat
caagaaccgtcaccgcagccgcctcaattgcttcagcatcagcataccccggaattcagc
aacaatattccgcctgtgggacccattaggatgccgagcagcaagatgcccaagggaagg
cggattttgggtgaccatgtggtgtatgatgtggatgtgagattgcaaggggaggttcag
cctcagcttgaggttacccctatcactaaatacacttcggatcctcagctgtgcttggga
aggcaaattgccgtcaataagtcttacatttgttacgggttgaagcagggcaatattagg
attctcaacatcaatactgctttgaggtccttgtttcgcacccaatctcagagggtcacc
gatatggctttcttcgctgaggatgttcatctcttggctagtgctggcctagatggacgg
attaatgtctggaaaatttctgaaggtccagatgaggaagagaagcctcaaattactgga
aagactgttattgctgttcaaatagtaggagagggggaaattaaaaatccacgagtttgt
tggcactgctataaacaagaaattttggttgctggagttggtaaacatgttcttagaatt
gatactaacagagttggaaagaatggagtatattcatcagacgttcctcttcagattcct
gttgataaactgattgatggtatccagttggtgggcaaacatgaaggagaagtgactgat
ttatcaatgtgccagtggatgactacccgtttggtttctgcttctatggatggcacgatt
aagatctgggaagatctcaaggcggtgcctcttgtggtattgcgaccacatgatgggctg
cctgtgtactcatctaccttcttgactgctaccaaccggccagatcatatcacccttatc
acagcggggccccagaatcgggaattgaaaatttgggtctcagacaaagaagaaggatgg
ctcctacctagtgacgcagattcattgacttgcacccagaccttagagctgaagagttca
gctgaacctcaagttgacgaggcgttcttcaatcaagttgtagctctatcccaagtgggt
ctcctcttacttgcaaatgcaaagaggaatgccatatatgttttgcacttggattatgga
tctaatccagcagcaacccacatggattacatatcagagtttactgttaccatgcctatc
ttgagtttgacagggactagtgatgttttacatggccaatatgttgctcagatttattgt
gtccagacacaggctattcagcagtacactttggacttatgccagtgcttaccgccactg
ttagcagatgtgggttccgagaagtcagaacccaatatttcacacgatctagctaatact
gaaggagttcctcctctggactcaagtggaaataaattttccgatatccctacaagttct
gcttcagtgggtgcagccattttgcgtgatatttcctcttctgatattgactctaagcct
cttgttttcaccccttctattagtgatgctgagattgcttgtgtcacatcatctcctctt
tccctgacacataagggtttcactgaggttacagttgcagcagggcttgagccaggcctg
ccacctggtgaccaaagttcaaatcaggcagtaattgattatttagttgaccagcaaatg
gacactattcatgcaaacttatcagatgttcattccttagatggtgatgtgaggactgat
gagattaaaggcacacgagatgaaagctctagcatccttaatccttctattatttttaaa
cacccaacacatctgataactccttctgagattttaatgggtgcttcatcccctagtaat
aatagtaataataatgaggtcaaggctgagtttgaagcaaatattcaagatgttgtcaat
aatgatgtcaataatgcagaggttgaggttaaagtagttggtgacacaaaatctactcat
aatgatgaatttggtctccgaggagaaacaaaacaccttatttcagaaaaaaaggaaaag
tatttttgctctcaggcttcagatcttggtattgagatggccaaggactgttgttccata
tcagcagaaactcatacaatggaggaatctcaacaagttgatggtgtagatgtggccaag
tttcttgcccaacctgctcatacaagtgaggaagaagtcgatgactccacaaaagataca
tcagggaaatcatctgagtcaagtatgcctgcaatagttcaacaatcaacatctccaaat
atgaagggaaagaagcagaagggaaaaaattctcaggcatcaggtccatcttctctgtct
ccaagtgcttctaattcaacagattcttcaaatgaaccagctggcacttcaagtctccca
tctttggatgctgcctttcctcaaatttttgccatgcaggagatgcttaatcagctagtg
accacacaaaaggaaatgcagaagcagatgtcaaatatggttgctgtccctgtttcaaaa
gaatgtagaagactggaagcagctttagggcggagcatagagaaagctgtcaagacaaat
agtgatgcactgtgggctcatattcaagaagagaatgcaaaaaatgaaaagctattgcga
gatcgcacacaacaaataacaagtatgatctctaactttgtcaacaaggacttgacagcc
gtgttagagaaagcagtgaagaaagaattggcttcagttgggcctgctgtagctcgtaca
gtttctccggttattgagaaaacaatatcttcagcaattgcagagtcgttccagagagga
atcggtgataaggcagtgaatcaactggagaaatcagttaattcaaaacttgaagcaact
gttgctaggcaaattcaagcacagttccaaatttctggcaaacaagctctccaggatgcc
ttgaaggctggtctggaagcttcagtagtccctgcctttgagatgtcatgtaaagctatg
tttgagcaagtagattcgaccttccgtaaagggatggttgaacatacaactgcagctaaa
cagcattttgaatctgcacattcttcattggcccttgctttaagagaagccatcaactct
gcttcatcattgactcaaacattgagtggggagttggctgaaagtcaaaggaagctggtt
gctcttgttgctgctggtgcaaactcaggttctgtaaatcccatggttacacaactgagt
aatggacctttagctggcctccgtgaaaaggttgagacgcatgtggatccaacaaaagac
ctatcaagattgatatctgaacacaaatatgacgaggctttcaccattgccctgcaaagg
agtgaagtgtcaattgtatcttggttatgttctcaggttgatttgcgtgggatattagca
atggttcctctccccttaagccaaggagtattgctctctcttctacagcaattggcctgt
gatgctggcaaggatacagctcgaaagcttacatggatgacggatgtggcggccgccata
aacccagaagacgaaatgattgcagtacacgttcggcccatctttgagcaagtaactcat
attctacaccatcaacggagctcgcctacaatcactggtcctgagctcgcaaccatccgc
gttctcatgcatgtcattaattctgttctagtgacctataaatga
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