Manihot esculenta (cassava): 110624441
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Entry
110624441 CDS
T05761
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110624441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110624441
Spliceosome [BR:
mesc03041
]
Complex A
U1 snRNP components
U1 related factors
110624441
Complex B
110624441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
110624441
NCBI-ProteinID:
XP_021625275
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All DBs
Position
10:complement(22258160..22277233)
Genome browser
AA seq
1028 aa
AA seq
DB search
MANNPPYSSIQPLQPPPVGSMDPPRNFVPPMPVQFRPVVPGQQSQQFIPMAAPHFQTVGR
SVPVMNAGLPTQPPQPQFPQPVQQLPARPGQPSPGPPPSQVIALPNAQPNRHVAPGSSLP
PPSIPTPINYAPGLGGPGAPLSTSYAFAPSSYGQPPVAFNAVTQYQPMAQMHGSNISAGG
QPGLSSASQSTAAPVQHNGQQSSAISVNVLTTGIQPTKLTEETTTDWKEHVSATGRRYYY
NKRTRQSSWEKPVELMTPIERADASTDWKEFTSPDGRKYYFNKVTRQSKWEIPEELKVAR
EQVEKASVMETQTETSSNSHTQAAGPPSVEKTPSSSDASAFPAQGAPSSPVPVTPVATVG
NLQSESASESSALAVMSSSVTSNLDGIQTAENPVSAVPGSSEATATGTGVDATTAQINNS
SNFSGQDNSGSANKAPTQDKEEAAKDVVTREKVNNVLLEEKAVSQEPLTYADKLEAKNAF
KALLESANVGSDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLGQKRKQEAEERRIKQ
KKAREDFRNMLEESKELSLTTRWSKAVTMFENDERFKAVERERDRRDLFDAFLQELEVKE
RAKIQEERKRNVMEYRQFLESCDFIKVSTQWRKVQDRLEADERCSRLDKIDRLEIFQDYL
RDLEKEEEEQRKIQKEELRKTERKNRDEFRKLLEEHVAAGSLTAKTHWRDYYLKVKDLPA
YLAVASNTSGSTPKDLFEDVAEELEKQYHEDKTQIKNVVKLKKVSLASTWTLEDFKAAIV
EDVSPPPVSDVNLKIVFDELLERAKEKEEKEAKKRKRLADEFLNLLHSIKEITASSKWEN
SKELFESSREFSSINEESICMEIFEEYIDQLKDQAKENERKRKEEKAKKEKEREERDRRK
SKHRSDKERGHEREKEHTKKEEADTEIDVTEDHFSNDNKRSGNDNNKKQRKRHNDSADNL
NENEKDRSKSSHRHSSEHKKSRRHNSTPDSDGESRHKRHKRDHRNGSRRNGDNLDLEDGE
FGDDGETR
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaaccctccatattccagtatacagcctcttcagcctcctccggttggctcc
atggatcctccacggaattttgttccccccatgcctgttcaattccgacctgttgttcca
ggacaacaatcacagcagttcattcctatggctgctccacatttccagacagttggccga
agtgtccctgtgatgaatgctggattgcctactcaacctccacagccccaatttcctcaa
ccagtgcaacagttaccagcaagacctggacaaccaagcccgggtccaccaccatcccag
gtcattgcattgccaaatgctcagccaaacaggcatgttgcaccaggatcatcattgcct
ccacctagtattccaactccaattaactatgcacctggtttaggtggccctggagcacca
ctttctacatcatatgcgtttgcaccatcatcctatgggcaaccaccagtagcttttaat
gctgtaactcagtatcagccaatggctcaaatgcatggctcaaatatatctgctggagga
cagcctgggttatcatctgcaagtcagagcactgctgcacctgtgcagcacaatgggcaa
caatcttcagctatctctgtcaatgttctgacaacaggcatccagcccactaagcttaca
gaggagactacaacagactggaaagagcatgtatctgctactggaagaagatattattat
aataagaggacaagacagtctagttgggagaagcctgttgaattgatgacgccaattgag
agagcagatgcatcaactgactggaaggaatttactagtcctgatggaagaaagtattac
ttcaacaaggttaccaggcaatcaaaatgggaaatccctgaggaattgaaggtggcccgt
gaacaagttgaaaaggcatctgtaatggagacacagacggaaacatcctctaattctcat
acacaagctgctggtcctccatctgtagaaaaaacaccatctagttcagatgcttcggct
ttccctgctcagggggcaccttcaagccctgttcctgttacccctgttgctactgttggt
aatttgcaatctgagtcagcctctgaatcatcagccttagctgtcatgtcttcttctgta
actagcaatctagatggaattcagacagctgagaatccagtttctgcggttcctggaagt
tctgaagcgactgctactgggactggggttgatgccacaacagcacaaataaacaactcc
agtaacttttcgggtcaagataattctggttctgcaaataaagctcccacacaagataaa
gaggaagcagcaaaagatgtggtaacaagggaaaaggttaacaatgttttgttggaagaa
aaagctgttagtcaggagcccttgacttatgctgataaactggaggcaaagaatgcattt
aaagcacttctggaatctgcaaatgttgggtctgactggacctgggaccaggccatgaga
gtaataattaatgacaaaagatatggtgcactgaaaacacttggagagcggaagcaagca
tttaatgagtacttaggacaaaagagaaaacaggaggctgaagaaaggcggattaaacag
aaaaaagcaagggaagatttcaggaatatgctagaagaatccaaagagctttcattaacc
acgagatggagcaaagcagtaacgatgtttgaaaatgatgagcgttttaaagctgttgaa
cgagaaagggaccgcagagatctgtttgatgccttcttgcaggaacttgaagtaaaggag
cgagcaaagatacaggaggagcgcaaacggaatgtaatggagtacaggcaatttttggaa
tcttgtgactttattaaggtgagcacccagtggcgaaaagttcaggatcggttagaggca
gatgagagatgttctcgtcttgacaaaattgatcgcttggaaattttccaggattattta
cgtgatttagagaaggaagaagaagagcagaggaagatccagaaggaagaactgagaaag
acggagcgaaaaaatcgagatgaattccgcaagctattagaagaacatgttgctgctggc
agtctgacagccaaaacccattggcgtgattattacttgaaggttaaagatttacctgca
tatttggctgttgcatcaaacacctcaggttcaactccaaaagatttgtttgaagatgtt
gctgaggagctagagaaacagtatcatgaggacaagacccagataaagaatgtggtgaag
ttgaaaaaggtttctttggcatcaacttggacactggaggattttaaggctgctattgtg
gaggatgtgagccctccacctgtatcagatgtgaatctaaagatagtatttgatgaattg
ctggaaagagccaaggaaaaggaggagaaagaagcaaagaagcgtaaacgtcttgcagat
gaatttctcaatttgttgcactctattaaggaaataactgcatcttcaaaatgggagaac
agtaaagaactttttgaaagtagccgagaattcagttctatcaatgaggagagcatctgc
atggagatatttgaggaatacatagatcaattgaaagatcaggcaaaggagaatgagagg
aagcggaaggaggaaaaggctaaaaaagaaaaggagagagaggaaagggacaggagaaag
tcaaagcatagaagtgacaaagaaagagggcacgaaagggaaaaggagcacacaaagaag
gaagaagctgacactgaaatcgatgtaacggaagatcatttttctaatgataacaaaaga
tcagggaatgacaataacaagaaacaaaggaagaggcacaatgattctgcagataatctt
aatgagaatgagaaggatcgatctaagagttcccacagacatagtagtgagcacaaaaag
tcaagacggcataactccactcctgattcagatggagaaagcagacataagagacataaa
agagaccatcgtaatggttctcgcagaaatggtgataatctggaccttgaagatggggaa
tttggtgatgatggggaaactcggtaa
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