Manihot esculenta (cassava): 110624712
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Entry
110624712 CDS
T05761
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110624712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110624712
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110624712
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
DUF7006
Motif
Other DBs
NCBI-GeneID:
110624712
NCBI-ProteinID:
XP_021625671
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Position
1:complement(4810909..4820206)
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AA seq
941 aa
AA seq
DB search
MGEDNNLEENKLPELKLDAKQAQGFLSFFKTLPHDTRAVRIFDRRDYFTSHGENATFIAM
TYYHTTTALRQLGSGPDGLSSVSISKTMFETIARDILLDRRDHTLEVYEGSGSNWRLVKS
GSPGNLGSFEDVLFANNEMQDSPVVVAIIPNFRENGCTIGLSYVDLTKRTLGLAEFVDDS
HFTNVESALVALGCKECLLPAESGKTSEYRTLHDALTRCGVMLTVRKKNEFKTRDLVQDL
SRLVKGSIEPVRDLVSGFEFASGALGALLSYAELLADESNYGNYTIRRYNLDSYMRLDSA
AVRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQT
FVEDTALRQDLRQHLKRISDIERLMHNLEKKRAGLQHIVKLYQSSIRLPYIRSALERYDG
QFSSLIKERYLDPLESLTDDDHLNKFVALVEASVDLDQLENGEYMISPNYDPALSALKDE
QESLERQIHDLHKQTAHDLDLPQDKGLKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVL
ETRKDGVKFTNTKLKKLGDQYQKIVEEYKNCQKELVNRVVETAATFCEVFESLAGILSEL
DVLLSFADLASSCPTPYTRPDITSSDAGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKS
WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKATISVRDCIFARVGAGDCQLLGV
STFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVIKAPTLFAT
HFHELTALADEKANSHANDIVGVANYHVSAHIDSSNCKLTMLYKVEPGACDQSFGIHVAE
FANFPKSVVALAREKAAELEDFSPNPIFSNDTAEEVGSKRKRSSDLDDMSRGAAHAHRFL
KAFSDLPLETMDLKEALHQVGKLKDDLEKDAANCHWLKQFF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagataacaatctcgaagagaacaagctgcctgagctcaagctcgatgctaag
caggctcagggttttctctctttcttcaagaccctaccccatgacaccagggctgttcga
atatttgataggcgggattacttcacttcacatggcgaaaatgcaaccttcatagcaatg
acctattaccatactactactgctttgcgacaattgggtagtggacctgatggcctttcc
agtgtgagtatcagtaagaccatgtttgaaacaattgccagagatattctgttggataga
agagaccacactcttgaggtctacgagggtagtgggtccaactggagactggtgaaaagt
gggagtccaggaaatctaggcagttttgaagatgttttgtttgccaacaatgaaatgcag
gattcccctgtggttgttgcaattattccaaatttccgagaaaatgggtgcactattggt
ttaagttatgttgatttaacaaaaagaactcttgggttggccgaatttgtggatgatagt
cactttacaaatgtggagtcagctttggttgctcttggttgtaaggaatgccttttgccc
gcagaaagtggtaaaaccagtgagtatagaacattgcatgatgctctgactagatgtggt
gtgatgttgactgtgagaaagaaaaatgagttcaaaacaagagatttggtgcaggatctc
agtaggcttgtcaaaggttccattgaaccagttcgagatttagtttctggatttgaattt
gcatctggtgctctaggggcattactttcatatgcagaattacttgcagatgagagcaat
tatggaaattatacaatcagaaggtacaatcttgacagctacatgaggctggattctgct
gctgtgagggctcttaatgtccttgagagcaaaactgatgcaaacaaaaattttagttta
tttggtcttatgaatagaacatgtacagctgggatgggaaagagattactgcatatgtgg
ctaaaacagcccttacttgatgtaaatgaaataaactctagactagacttggtacagact
tttgtggaggatactgcacttcgccaagacctaaggcaacatctaaaaaggatctcggat
attgagcgactgatgcacaatcttgagaagaaaagagctggtttgcagcatattgtaaag
ctttatcagtcgagtataagacttccatacattagaagtgctctcgaaaggtatgatgga
caattttcatccttaatcaaggaaagatatttggatccccttgagtcattgactgatgat
gatcacttgaataagttcgttgctctcgttgaagcttctgttgacctggatcaacttgag
aatggggagtatatgatttcaccaaattatgaccctgctctatctgcactgaaagatgag
caagagtcattggagcgccaaatacacgatttgcataaacaaactgcgcatgatcttgat
cttcctcaagataaaggattaaagttagataaaggaacacaatttggacatgtcttcaga
attactaagaaagaagaaccaaaaataaggaaaaagctgaccacccaatttattgtcctt
gaaacccgaaaagatggggtgaaattcacaaacacaaaacttaagaagttaggggatcag
taccaaaagatagtagaagaatacaagaattgccagaaagagctggtcaatcgagttgtt
gaaactgcagcaactttttgtgaggtgtttgagtctttagctggcatactttctgaattg
gatgtcttactcagttttgctgatttggcttctagttgtccaactccctacacaagacct
gacatcacatcatcagatgcgggagatataatattagaagggagtagacatccttgtgtg
gaagctcaagactgggttaattttataccaaacgattgcaaacttgtcaggggaaagagt
tggttccaaataatcacagggcctaatatgggtggaaaatccacatttattcggcaagtt
ggtgtgaatattcttatggcgcaagttggttcatttgttccttgtgacaaggctaccatt
tcagttcgcgattgcatttttgctcgtgtaggtgctggtgactgccaactacttggagtt
tctacctttatgcaagaaatgcttgaaactgcttcaatactgaaaggagctacagataag
tcattgataatcattgatgagttgggccgtgggacatcaacttatgacggatttggttta
gcttgggccatatgtgaacaccttgttcaagtaattaaagcacctacattatttgcaacc
cactttcatgaactgactgcattagctgatgaaaaggccaactctcatgcaaatgatatc
gttggtgtggcaaattatcatgttagtgcacacattgactcgtcaaattgcaagctgaca
atgctttacaaggttgaaccaggggcttgcgatcaaagttttggtattcatgttgcagaa
tttgcaaattttcctaaaagtgttgttgcacttgctcgagaaaaggcagctgagttggaa
gatttctcacctaatcctatcttttcaaatgatactgcagaagaggtgggttccaaacga
aaaagatccagtgaccttgatgatatgtctagaggtgcagctcatgctcaccggtttctg
aaagcattttctgatttgccattagagactatggatttgaaggaggctttgcaccaagtg
ggcaagctgaaggatgacttggagaaggatgcagcaaattgccactggctcaagcaattt
ttctag
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