Manihot esculenta (cassava): 110624733
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Entry
110624733 CDS
T05761
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110624733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110624733
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110624733
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
110624733
NCBI-ProteinID:
XP_021625695
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Position
10:3989929..3995520
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AA seq
910 aa
AA seq
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MDRSSNKDKSSKRSREDRDRDSTKDHRVRERDHKHRSRDRDRDDKHRESDSLHRHHRSDR
ESHRDYYKSSRREDRESSRDRELKRERSYEPREDREGSREALERSHEPRSNKKSPSLRRE
DRERSRERSYDLREDGEGNRDGREREANGEMSYDSEDLEYEARRKRKERGDDEDRVVERA
KRARVSEEKRERKRFEDKVKEEDSTDENDNNISIENAKRMESSLINAKQEVNDEPISGST
ANGVNATDNGAALESFTKPSSFLPESPMGSVHPLPIKVSSISNTNENRGVSITRSHEVPG
KSSTDGASSAAGKSGSLSLDALAKAKKALQMQKELSEKLKKIPLLSKGASSSSDNRASSL
VKEELKVQSSITGGVQGVNPPTFTAVSAGTLSSTLAAGKPPASGMESLPGLASIPNIEAV
KRAQELAAKMGFRQDPEFAPLINLFPGQVPAEVSVPQKPTKAPVLRIDALGREIDEHGNV
VNVTKPSNLSTLKVNINKQKKDAFQILKPELEVDPESNPHFDQSMGINKNKLLRPKRMSF
QFVEEGKWSKEAEMMKLKSQFGEERAKDMKARQALHAKAKAAPDINPNLIEVSVRVIIKE
KTKEPIPEIEWWDVPLLPSGTYSDIDDGDITEKLKMEKITIYVEHPRPIEPPAEPAPPPP
QPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTK
LEKEIRSAAAEREQAHIDRNIARKLTPSERREKKEKKLFDDPNIVETIVSVYKINDLSHK
KTRFKVDVNAQENRLTGCVVISEGINVVVVEGGSKSIKRYGKLMLRRINWAEAVEDEEED
GDDSDDKPVNKCVLVWQGSVAKPSFNRFSVHECVTEAAARKVFADAGVGHYWDLAVNFCD
DQMYGLMKLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggatagatcctctaacaaggataaatcttccaaacgctcccgagaagaccgcgaccgt
gactccaccaaagaccaccgggtccgggagcgggaccacaaacaccgatcccgagatagg
gaccgagatgataaacatcgggagtctgattctctccaccgtcaccatcgatcggaccgg
gaaagccatcgcgactattacaagtcgtcaaggcgtgaggatcgggagagctctagagac
cgcgaactgaagcgggaacgatcgtacgagccgagagaggatagggaggggagtagggag
gcgcttgagcgctctcacgaaccgcgaagcaataagaaatccccctcgttaaggcgcgag
gaccgagagcggtctcgtgagaggtcctacgatctgagagaagatggagaagggaacaga
gatggacgcgagagagaagcaaatggagagatgtcgtatgatagtgaggatttggagtat
gaagctagaaggaagagaaaagaaagaggagatgacgaggatagggttgttgagagggca
aagagggctagggtttcagaagagaagagagagaggaaaagatttgaggataaagtgaaa
gaagaggatagtactgatgagaatgacaataatatcagtattgaaaatgctaagagaatg
gaatcaagtttgattaatgcgaaacaagaagtgaatgatgagccaattagcggtagtact
gccaatggagtcaatgctactgacaatggtgctgccctggaatcattcactaagccatcg
agctttttgcctgagagtcctatgggatctgttcatcctcttcctatcaaggtatcttca
atttcaaacacaaatgaaaataggggagttagtattaccagatctcatgaggttcctgga
aaatctagtacagatggggcatcttcagctgctgggaagagtggaagtctatcccttgat
gctttagcaaaagctaaaaaggctttacaaatgcagaaggaactgtccgagaagctgaaa
aagatacctctattgagcaagggtgctagctcaagttcagataatagggcatcatctctt
gtaaaggaggagctgaaagtacagtcgtctattactggaggagtacagggggtcaatcca
cccacattcactgctgtttcagcagggacattgtcaagtacattggctgctgggaagcca
cctgcgagtggcatggaatctcttcctgggcttgctagcataccaaatattgaagctgtt
aaacgtgctcaggagcttgctgctaaaatgggattccggcaggatcctgagtttgctcct
cttataaacttgttccctggccaggtgccagcagaagtttctgtaccacagaaacctacg
aaagcccctgttcttcgtatagatgcacttggtcgtgaaatagatgaacatggaaatgta
gtgaatgtgactaaaccaagcaaccttagcaccctaaaggttaacatcaacaagcagaaa
aaggatgcatttcagattcttaaacctgaattggaagtggatcctgaatcgaatcctcac
tttgatcaaagcatggggataaataagaataagcttttgaggcccaaacggatgagtttc
cagtttgtagaggaagggaagtggtcgaaggaagctgaaatgatgaaattgaagagtcaa
tttggagaagaaagggcaaaagatatgaaggcgagacaagcattacatgcaaaggcaaaa
gcagctcctgatataaatcccaatttgatagaggtatcagtgagggttataattaaagaa
aagaccaaggagccaattcctgaaattgagtggtgggatgtacctcttctgcctagtgga
acttatagtgacattgatgatggtgatataactgagaagttgaaaatggagaagatcaca
atctatgtagaacacccacgtcccatcgagccccctgctgaaccagctcctccaccacct
cagcctttgaagctaacaaaaaaagagcagaagaagctccgtactcaacgtcgtttggct
cgggaaaaggatagacaggagatgattaggcaaggcttgattgaacccccaaaacctaaa
gtcaaaatgagcaatttaatgaaagttcttggctctgaagctacacaggatcctacgaaa
cttgagaaggaaatccgcagtgcagctgctgagcgtgaacaagctcatattgacaggaat
attgcacgcaagctcactccttctgagcgccgtgagaagaaggagaaaaagctctttgat
gacccaaatattgtagagacgattgtttctgtctacaaaatcaatgacctgtctcacaag
aagacccggttcaaagtagatgttaatgctcaagagaatcgtttaactggttgcgtcgtg
atttctgaaggaattaatgttgtggttgttgaaggtggaagcaaatccattaagaggtat
gggaagctaatgcttaggcgcataaactgggccgaggctgtagaagatgaagaagaagat
ggagatgacagtgacgacaagccggtgaacaaatgcgtgttggtgtggcaaggcagtgtt
gcaaaaccaagctttaataggttttctgtacacgagtgtgtaactgaagctgcagctcgg
aaagtgtttgctgatgctggtgttggccactattgggatcttgctgtcaacttctgtgat
gatcaaatgtacggcttgatgaaactaatctaa
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