Manihot esculenta (cassava): 110624826
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Entry
110624826 CDS
T05761
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110624826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110624826
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110624826
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110624826
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110624826
U7-dependent histone pre-mRNA processing factors
110624826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
110624826
NCBI-ProteinID:
XP_021625865
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All DBs
Position
10:complement(28896810..28901681)
Genome browser
AA seq
694 aa
AA seq
DB search
MASTGQSQSLKRRDAPVTREGDQLTLTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT
DYVKVSKVSVEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICVIESTYGVQLHQPRHIREKRFTDVIHS
TISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKKCMTVYQTYILS
MNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPSGLQSGLSRQLFDMWCSDK
KNACVLPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLRE
LMPPNIILVHGEANEMGRLKQKLITEFADGNTKIITPKNCQSVEMYFNSEKMAKAIGKLA
EKTPDVGETVSGILVKKGFTYQIMAPEDLHVFSQLSTANITQRITIPFTGAFGVIKHRLE
QIYESVVSGTDEESGVPTLQVHERVTVKHESDRHISLHWNADPISDMVSDSVVALVLNIS
REVPKVVVESEAVKSEEENGKKAEKVIYALLVSLFGDVKLGENGKLVITVDGNVAQLDKQ
SGDVESENEGLKERVRTVFRRIQSAVRPIPLSAS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacaggacaatcccaatctctgaaaagacgggatgcaccagtaacaagagaa
ggagatcaactaactttaactcctcttggggctggcaatgaagtgggtcgttcctgtgta
tacatgtcctataaagggaagactgtgctgtttgattgtggaatccatccagcttactca
ggcatggctgcattgccttactttgatgagattgatccttcaactattgatgtacttctc
atcacccactttcacttggatcatgctgcatctctgccttatttcttggagaagaccaca
tttaagggccgtgttttcatgactcatgcaacgaaggccatctacaagttgcttttaaca
gattatgttaaagtcagcaaggtttcagttgaagacatgttgtttgatgaacaagacata
aaccgctccatggataaaattgaggttattgacttccatcaaacggtggaggtgaatggc
attaagttttggtgctatactgctggccatgtccttggtgctgccatgttcatggttgac
attgccggtgttcgagtcctctatactggtgactattcacgtgaagaagatcggcatctc
cgtgctgctgagatgccacaattctcccctgacatatgtgtaattgaatccacttatggg
gtccagctccatcaacctcggcacattcgggagaagcggtttactgatgtcatccactca
actatttctcaagggggtcgtgttctaatcccagcatttgcccttggtcgtgcccaagaa
cttctcttgatccttgatgagtactggtcaaaccatcctgaactccataacattcccata
tattatgcttctccccttgcaaagaagtgtatgactgtctatcagacatatatcctttca
atgaatgagagaatccgcaaccagtttgcaaactcaaatcctttcaaattcaagcacata
tcaccactaaatagcattgaggattttactgatgtgggtccatcagtggtcatggctagt
ccaagtggattgcaaagtgggctgtcaaggcagttatttgatatgtggtgctctgataag
aaaaatgcttgtgttctacctggatatgttgttgaaggcacactagctaagactatcatt
aatgaaccaaaggaggtcactctaatgaatggactaactgctcctctgaacatgcaagtc
cattatatttcattctctgcccatgcggattatgctcagactagcacattcttgagagag
ctgatgcctcctaacataattcttgttcatggagaagctaatgaaatgggaagactcaaa
cagaagcttatcacagagtttgcagatggcaacaccaaaatcatcactcctaagaattgc
cagtctgttgagatgtatttcaactctgaaaaaatggcaaaagcaatagggaagctagct
gagaagaccccagatgtcggtgaaaccgtcagtggcatattagtaaagaagggcttcacc
taccaaattatggcacctgaagatctccatgtattctcccagctatcaacagcaaatatt
actcaaagaattaccatcccattcactggtgcctttggtgtgataaagcatcggcttgag
cagatatatgagagtgtagtatccgggaccgatgaggagtctggggttccgacattgcaa
gtgcatgagcgagtgactgtgaagcacgagtctgataggcatatttcacttcattggaat
gcagatccgataagtgatatggtgtctgactcggttgtagctctagttttgaacatcagc
agggaggttcccaaggtggtagttgagtcagaggctgtgaaatcagaggaagaaaatggg
aaaaaagcagagaaggttatatatgcgctccttgtttcactttttggagatgtaaagctt
ggagagaatgggaagctggtcataactgttgatgggaatgtggcgcagctcgacaaacag
agcggggatgttgagagcgaaaatgaaggtctcaaggaaagggtcaggactgtgtttagg
cgaattcaaagtgcagtgaggccaattccgctctctgcatcataa
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