Manihot esculenta (cassava): 110625452
Help
Entry
110625452 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110625452
09122 Translation
03013 Nucleocytoplasmic transport
110625452
03015 mRNA surveillance pathway
110625452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110625452
03041 Spliceosome [BR:
mesc03041
]
110625452
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110625452
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110625452
Spliceosome [BR:
mesc03041
]
Complex C
Other components
EJC/TREX
110625452
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110625452
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110625452
NCBI-ProteinID:
XP_021626738
LinkDB
All DBs
Position
11:complement(6706616..6713161)
Genome browser
AA seq
546 aa
AA seq
DB search
MKFENFIYFNYYYCPLHFPLKIEFNLTRKVSLVIVPSFSSYPLLHSLQNPSQLPHCLLLN
YIALCCRGFQFIKLLLIIFNSFELSVSLSLCVCVRLFNFHFSVYSFKTLVHSWSSEGKMG
EVKDNDAYEEELLDYEEEVENAPDSVSAKAAAESAKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLC
HTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIKVHKDILKNEFPHIVVGTPGRILALV
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVNRA
AELNKLLAECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQIDT
STYMPS
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaaaatttcatatattttaattactactattgtccccttcatttcccacta
aaaatcgaatttaacctgaccaggaaggttagtttggtcattgtgcctagcttttcttcc
tatcctctccttcactctcttcaaaaccctagccagcttcctcactgcttactgctaaac
tatattgctctgtgttgcagaggttttcaatttattaaacttttactaattatttttaac
tcctttgagctctctgtctctctctctctgtgtgtgtgcgtgcgcttatttaattttcat
ttttctgtttattctttcaaaaccctagtacactcttggagttctgaaggcaaaatgggt
gaagtaaaagacaacgacgcctacgaggaggagctgctcgactacgaggaagaggtcgaa
aatgctccagattccgtctctgctaaggccgcagctgaatctgctaagaagggctatgtt
ggaattcacagttcgggattcagagacttcctattgaagccagagcttctacgagccatt
gtagattctggattcgaacatccttcagaagtgcaacatgagtgcatccctcaagctata
ttaggaatggatgtaatctgccaagcaaaatctgggatggggaagactgctgtttttgtt
ttatcaactttgcagcagattgagcctgttgcaggacaagttgctgcacttgttctttgc
catacaagagaattagcatatcaaatatgccatgaatttgagaggttcagcacatatttg
ccagatataaaggttgctgtcttctatggtggtgtccatatcaaggttcacaaggatata
ctaaaaaatgaattcccccatattgttgttggaactcctggaagaatattggctctagta
agagacaaggaccttggattgaagaatgtgaggcattttatcctagacgagtgtgataag
atgcttgaatcacttgatatgaggagagatgttcaggagattttcaagatgactcctcat
gataagcaagtaatgatgttttcagcaacgcttagcaaggaaattcgtcctgtctgcaag
aaatttatgcaagatcctatggaaatttatgtcgatgatgaggccaagttgactcttcat
ggtcttgtacagcactacattaaactgactgagatggagaaaaatcgcaagttgaatgac
ctgcttgatgccttggacttcaatcaagtagtcatttttgtcaagagtgttaacagagca
gctgagctgaacaaattattggcggaatgcaacttcccctcaatatgcatccattctgga
atgtctcaggaagaaaggttgacaaggtacaagggtttcaaggaggggcataagcgaatt
cttgtggcgactgatttggttggaagagggattgatattgaacgtgttaacattgttatc
aactatgatatgccagattcagctgatacgtacctgcacagggtggggagagccggtagg
tttggcaccaagggtcttgcaattacatttgtctcatctgcatccgactctgacgttctg
aatcaggtccaagcaaggtttgaggtggacataaaggagctccctgagcagattgatact
tccacatacatgccatcatga
DBGET
integrated database retrieval system
