KEGG   Manihot esculenta (cassava): 110625499
Entry
110625499         CDS       T05761                                 
Name
(RefSeq) ubiquitin receptor RAD23b
  KO
K10839  UV excision repair protein RAD23
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03420  Nucleotide excision repair
mesc04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    110625499
  09124 Replication and repair
   03420 Nucleotide excision repair
    110625499
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:mesc03051]
    110625499
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110625499
Proteasome [BR:mesc03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    110625499
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      110625499
SSDB
Motif
Pfam: XPC-binding UBA ubiquitin Rad60-SLD UBA_7 CUE UBA_3 TECR_N Dsc3_N Rad60-SLD_2 UBA_RAD5A
Other DBs
NCBI-GeneID: 110625499
NCBI-ProteinID: XP_021626805
LinkDB
Position
11:complement(10186171..10197364)
AA seq 369 aa
MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVSEDGFLVVMLSKSKTSVGSSSTQPAAAPTITPTSNSTPAIAVQAPVSKSTSASETA
TATAQTDTYGQAASNLVADNNLDQMIQQIMDIGGGNWDIETVTRALRAAYNNPERAVDYL
YSGIPETVEVAVPVAHFPAGQATETGAAGAPPGSGAPNTSPLNMFPQETLSAGGGDGGEG
LGSLDFLRSNQQFQTLRSMVQANPQILQPMLQELGKQNPHLLGIIQEHHAEFLQLLSEPL
EGSEGEMFEQVDQEMPHAINVTPAEQEAIERLEAMGFDRALVVEAFLACDRNEELAANYL
LENAGDFED
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgaagctcactgttaagactctcaaaggcagccatttcgaaattagggttcagcccact
gatacagttatggctgtcaagaaaaatattgaagatgtgcaaggaaaggacaattaccca
tgcgggcagcaactattgatccacaatgggaaagtattgaaagatgagactacactggcg
gacaataaggtctctgaagatggttttcttgttgtaatgcttagcaagagtaaaacatca
gttgggagctcttctacccagccggctgctgcacctacaattacacctacatcaaactca
actcctgcaattgcagttcaagcaccggtctcaaagagcacatctgcttctgaaacagca
acagctactgcacaaactgatacctatggtcaagctgcttcgaacttagtagctgataat
aatcttgaccagatgattcaacaaataatggatataggaggtgggaactgggatatagaa
actgttactcgtgcacttagagcagcttataacaatccagagcgagcagtggattatttg
tactctggtattccagaaacagtggaagttgctgtcccagtggctcatttccctgcaggt
caggcaactgaaacaggtgcagcaggagctccacctggctctggagcacccaatacgtct
cccctgaatatgtttcctcaggagacactttctgctggtggtggcgatggtggtgaggga
cttgggtcccttgatttccttcgaagtaatcaacagtttcaaacactgcgttcgatggtt
caggcaaatccacaaattttacagcccatgcttcaggagctagggaagcaaaaccctcat
ttactaggaataattcaagaacatcatgcagaatttcttcagttattaagtgaacctctt
gaagggtctgaaggggaaatgtttgaacaggtcgaccaagagatgcctcatgctatcaat
gtgacccctgctgaacaggaggctattgaaaggcttgaggcaatgggatttgatagagcc
cttgtcgtcgaggcatttttggcttgtgatcgcaatgaggaattggctgctaactacctg
ttggaaaatgctggagattttgaggattga

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