Manihot esculenta (cassava): 110625554
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Entry
110625554 CDS
T05761
Name
(RefSeq) putative rhamnogalacturonase D
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00040
Pentose and glucuronate interconversions
mesc01100
Metabolic pathways
Module
mesc_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
110625554
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
110625554
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Phage_tail_X
Motif
Other DBs
NCBI-GeneID:
110625554
NCBI-ProteinID:
XP_043817327
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Position
11:complement(6686155..6692767)
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AA seq
787 aa
AA seq
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ILQEIFIIFYILSLISAIFNGVSSKNTYDILSYGAVGDGKTDDTLAFVKTWNATCNDSDT
PTMIIPDGKTFLVHQVTLAGPCKSTNVNFQLSGKIIAPAPIAWNGRDSGRWLAFRQVDGL
IIAGTSNGLLDGSGKAWWDISCKHNPGKILGFENCNNINMRGIRTVQSGGVHIRFHSCEQ
VELDSLNLQSPGDSPNTDGIHISHSKSFFINNSIIGTGDDCISIVDRSYNINITYIDCGP
GHGISIGSLGQKGEEVDVNNITVSHINFHNTTNGARIKTWTVGRGQVQNVQFSDIIFKEV
QNPIIIDQHYTESGNTPSPPSNVGVHINGVQYLGLNGTSKTQAAINLNCSENVACTNIRL
ENIELKSATPGEEVKSSCNNAFGSAQGVVEPSSCLRQQGSIYHSLNNTYDVINYGAIGDG
NTDDTLAFVKAWSDTCKDPDTPTMIIPDGKTFLVHPINLAGPCESTNINVQVSGKIVAPD
DPKAWKGLDFGKWLVFQQVDGLIVAGTDDSLLDGSGQAWWDISCKKNPGKPGCNQLAPAI
LGFESCNNINMRGIRTVQSGGIHVRFHGCQQAELESLNLQSPGDSPNTDGIHISHSKSFF
INNSIIGTGDDCISIVDRSYNINITYINCGPGHGISIGSLGEDGEAVDVHNIAISQINFY
NTTNGARIKTWPGGNGLVQNVEFSNIIFNEVANPIIINQYYSDSGKSPPPASNVGVHIDK
VQYYGLNGTSKSVVAIDLNCSNYVPCTNIILENIELISATPGEKVDSSCNNAFGSAKGVV
EPNSCLR
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
attttgcaggaaatatttattattttttatattttgagtttgatttcggcaatatttaat
ggcgtttcaagtaaaaatacttatgatattcttagttatggagcggttggcgatggaaag
actgatgatacactagcatttgttaagacatggaatgccacatgtaatgattcagacaca
cctaccatgatcatccctgatggaaagacatttttggtgcatcaagtaactcttgcaggt
ccttgcaaatctaccaacgttaattttcagctatcaggaaagattatagcccctgctccc
attgcatggaacggacgggattctggaaggtggttagcctttcgacaagtagatgggttg
ataatagccggcactagcaatggcttgctagatggaagtggaaaggcctggtgggatatt
tcttgcaaacacaatcctggaaagatactcggatttgaaaattgtaataacattaatatg
agaggaattagaaccgtacaaagtggtggagttcatattcggttccacagctgcgagcaa
gtcgaattggattcactgaacctacaatcacctggtgatagccccaacactgatggcatc
cacatttctcactcaaaatcttttttcatcaataactccatcatcggcaccggagatgat
tgtatctccattgtcgatcgctcttacaacattaacattacctacattgactgtggacct
ggtcatggaatcagtattggaagcttaggacaaaagggagaagaagtagatgtaaacaac
ataactgtaagtcacataaatttccacaacacaaccaatggggcaagaatcaagacatgg
acggtgggaagaggccaagttcaaaatgtccaattctctgatataatatttaaagaagtg
caaaatcccataatcattgatcagcattacactgaatctggaaatacgccttcgccgcca
tcgaacgttggggttcatataaatggagttcaatatcttggattgaatggaacgtcaaag
acacaagcagctatcaatctgaattgcagtgagaatgtggcttgcacgaatatcagattg
gaaaatatagaattgaaatctgcaacaccaggagaagaagtcaaatcaagctgcaacaac
gcttttggatcagctcaaggagttgtggaacctagttcctgtctccgccaacaaggatcc
atttaccattctcttaataatacctatgatgttataaattatggagcaatcggagatgga
aatacagatgatacactggcatttgttaaggcatggagtgatacatgtaaggatccagac
acacctaccatgatcattcctgatggaaagacatttttggtgcatcctataaaccttgca
ggcccttgcgaatctaccaacattaatgttcaggtatcaggaaagattgtagctcctgat
gatcccaaagcatggaaggggttagattttggaaagtggttagtttttcaacaagtagat
gggctgatagtagctggcactgacgatagcttgctagatggaagtggacaggcctggtgg
gatatttcttgcaaaaaaaatcctggaaagccgggttgcaatcaacttgctccagcgata
ctcggatttgaaagttgtaataacattaatatgagaggaattagaaccgtacaaagtggt
ggaattcatgttcgcttccacggctgccagcaagccgaactggaatcactgaacctgcaa
tcacccggtgatagccccaacactgatggcatccacatttctcactcaaaatcttttttc
atcaataactcgatcattggcaccggagatgactgtatctccattgtcgatcgctcgtac
aacattaatattacgtacattaactgtggacctggtcatggaatcagcattggaagctta
ggagaagatggagaagctgtagatgtacacaacatagctataagtcaaataaatttctac
aacacaaccaatggggcaagaatcaaaacttggccgggtggaaatggcctggttcaaaat
gttgaattctctaatataatatttaatgaagtggcaaatccaataatcattaaccagtat
tacagtgattctggaaagtcacctccgccagcatcgaatgttggagttcatatagacaaa
gttcaatattatggattaaatgggacgtcaaagtcagtagtagctatcgatcttaactgc
agtaactatgtgccttgcacaaatatcatattggaaaatatagaattgatatctgcaacg
ccaggagaaaaagtcgattcaagctgcaacaatgcttttggatcagctaaaggagttgta
gaacctaattcttgtctccgatga
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