Manihot esculenta (cassava): 110625571
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Entry
110625571 CDS
T05761
Name
(RefSeq) nuclear pore complex protein NUP93A
KO
K14309
nuclear pore complex protein Nup93
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110625571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110625571
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110625571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
PrmA
Motif
Other DBs
NCBI-GeneID:
110625571
NCBI-ProteinID:
XP_043817718
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All DBs
Position
11:8996546..9010673
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AA seq
862 aa
AA seq
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MANDQDMGSWTDLLHSSSKLLEQAAPSAQFPPLQRNLDQLEALSKKLKAKSLRTEAPSQS
IAATRLLAREGINAEQLARDLKSFELKTTFEDVFPAEATSVEEYLQQVHEMAMVSAIQEA
QKDNLRSFNDYMMKVLEEDWQKEKRDFLQSLSRISTLPRTNAVDTSTGTILSGQKASIVS
SPQVSSGPSGVELVPLANKSILERKASAYAEVVKNLNNARERGLQFKPATAFRSAYESLG
IEASGGRSVNMQKIWHLVQTLMGENSTIHQNLSRKMSLVIGARRHLEWGHEKYIMDTIQS
HPAQAALGGAVGNLQRVRAFLRIRLRDYGVLDFDSGDARRQPPVDTTWQQIYFCLRTGYY
DEARNVALTSRASQQFAPLLTEWINTGGMVPMEIAAVASEECEKMLRMVDRVGRATYDKK
KLLLYAIVSGSRRQIDRLLRDLPTLFNTIEDFLWFKLSAVRDFHGETSSVVLNEGSIPYS
LEDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLKAVLHLSKEVANEGYDIDAVHMS
IVLADHGVLSDAGAGQKLGVMDAYAEISSIIRQYGSAYLRHGNLPVTLEYYAQAAAAVGG
GELSWTGRGNMDQRRQRSLMLKQLLTELLLRDGGIYLLLGPRGAGEEGELVRFLNDFKAR
QQFLLEAARQCQETGLYDKSIEIQKRVGAFSMALDTINKCLSEAISALSRGKLDGESRTS
GLIHSGNEILETYKYYPEVSLQEREHVLEQETVLRQLEAILSVHKLARLGHYLDALREVA
KLPFLPLDPRVPDVTVDAFQNLSPHVQVCVPDLLKVALTCLDNVTDSDGSLRAMRAKIAQ
FLANNMSRNWPRDLYEKVARSL
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgaccaagacatgggtagctggaccgatctcctccactcctcctccaagctt
ctcgaacaagctgctccttctgctcagttccctcctctacagaggaacttagatcagtta
gaagcattatcaaagaagctcaaggcaaaatccttaagaactgaagccccttctcaatct
attgctgcaacaaggcttcttgcacgagaaggaataaatgctgagcagcttgcacgagat
cttaaatcttttgaattgaagacaacatttgaagatgtgttccctgctgaggctacaagc
gttgaagaatatttgcaacaggttcatgaaatggcaatggtgtcggccatacaggaagca
cagaaggataacctaagaagctttaatgattacatgatgaaagttttggaggaagactgg
caaaaagagaaacgtgactttcttcagagcttgagccgtatttcaacattacccaggact
aatgcagttgatacaagtactggaaccattctttcaggtcaaaaagcatctattgtttcc
agccctcaggtttcttctggcccatctggcgtggagcttgtgcctttagctaacaagtcg
attctggagagaaaagcttcagcctatgccgaagttgtgaaaaatctgaacaatgcaaga
gaacgtggcttgcaatttaaaccggcaacagccttcaggagtgcttatgagagtttgggt
attgaagcttccggtggaagatcagttaacatgcagaagatatggcatcttgttcagacg
ttgatgggtgagaattcaaccattcatcagaatctttcaaggaaaatgtcattagtcatt
ggtgcaaggcgccatctagaatggggacatgaaaagtatattatggatacaatacaaagt
catccagcacaggctgcccttggtggagctgttgggaatttacaaagagttcgtgcattt
cttcggatacgcttaagggattatggagttctagattttgattcaggagatgcacgcagg
cagccgccggttgataccacttggcaacagatctacttttgcttgagaactggatactat
gatgaagcaagaaatgtggccctcacatcccgtgcttcacagcaatttgctcctttgctt
acagagtggatcaacactggaggaatggtgcctatggaaattgcagctgttgcttcagaa
gaatgtgaaaaaatgttaagaatggttgatcgggtgggtcgagctacctatgacaagaaa
aagttgttactctatgctatagtatctggttctaggaggcaaattgaccgcctactgaga
gatctaccaacacttttcaataccatagaagattttttgtggttcaagttatcagctgta
cgagatttccatggcgaaacatcatctgtggtcctgaatgaaggttcaataccatatagt
ttggaagatttacaggcttatcttaataaatttgagccatcatattataccaaaaatggg
aaggaccctctggtttacccgtatgtgttgcttttaagcatccagttactaaaagctgtc
ttacatttgtctaaggaagttgcaaatgaaggatatgatattgatgctgtccacatgtca
attgtgctagcagaccatggggttctttctgatgctggggctggacaaaaattaggggtc
atggatgcttatgctgaaatctctagtattattaggcagtatggttctgcatacctacgc
catggcaatctccctgtgacattggaatactatgcgcaagctgctgctgcagtagggggt
ggggagttgtcatggactgggagaggcaacatggatcagaggagacagagaagtttaatg
ctgaagcaactccttactgagctattgttacgagatggtggtatttaccttttacttggt
ccacgtggtgctggagaagaaggtgaattggtacggtttttgaatgatttcaaagcaagg
cagcaatttctgcttgaagctgctcgccagtgtcaggaaactggactatatgacaaatct
atagaaattcagaagagggttggagcattctctatggctctagatacaattaataagtgc
ctgtctgaagcaatctctgccctgtcacgtggtaaattggatggtgagagtcggacttct
ggtctcattcattctggcaatgagattttggagacatacaagtactatcctgaagtcagt
cttcaagagagagagcatgttttagagcaagaaactgtgttaagacaacttgaagcaatt
ttgtctgttcacaaactggcaagacttggtcattatcttgatgctctaagggaggtggct
aaacttccctttcttccattagatcctcgagtgccagatgtcacagtggacgcatttcag
aatttgtcacctcatgttcaagtttgtgtgccagaccttctgaaggttgctctcacttgt
ctcgacaatgtgacagattctgatggatcacttcgtgccatgagagcaaagattgcacag
ttcctcgccaacaacatgagtagaaattggcctcgcgatttgtatgaaaaggttgctcga
agtttgtga
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