Manihot esculenta (cassava): 110626280
Help
Entry
110626280 CDS
T05761
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110626280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110626280
03009 Ribosome biogenesis [BR:
mesc03009
]
110626280
04131 Membrane trafficking [BR:
mesc04131
]
110626280
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mesc04147
]
110626280
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
110626280
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
110626280
Membrane trafficking [BR:
mesc04131
]
SNARE
SNARE associated proteins
Others
110626280
Autophagy
Aggrephagy
Other aggrephagy associated proteins
110626280
Exosome [BR:
mesc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110626280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
AAA_17
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
NACHT
Vps4_C
NB-ARC
AAA_24
TsaE
AAA_lid_PRS2_C
DUF815
Sigma54_activat
Zeta_toxin
Sigma54_activ_2
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
110626280
NCBI-ProteinID:
XP_021627792
LinkDB
All DBs
Position
11:complement(31461708..31467064)
Genome browser
AA seq
805 aa
AA seq
DB search
MADQAGSSDSKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVSMHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCEPPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGSLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCV
VAPDTEIFCEGEPVRREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDEVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQI
FKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRRREN
PEAMDEDVEDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSE
TRTSGAASDPFATSAGGADEDDLYD
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccaagcgggatcatccgattcgaaatcggggaagaaagacttctcgacagct
attttggagaggaaaaagtcacctaataggttggtcgttgacgaggctgttaacgatgac
aattcggttgtttcgatgcacccggatactatggagaagctccagctcttccgcggtgac
accattctcatcaagggaaagaaacggaaggatacaatttgcattgctcttgctgatgat
acctgtgagccaccaaaaatcaggatgaacaaggttgttagatctaacctgagggttcga
cttggagatgttgtatctgtgcaccaatgcccagacgttaagtatggaaagcgtgttcac
attttgccaattgatgacaccatagaaggtgttactgggagtctgtttgatgcatacctg
aaaccctatttcttggaggcttacaggcctgtgaggaaaggggaccttttccttgttaga
ggagggatgagaagtgtagagttcaaggtcatagaaactgatccagcggagtattgtgtg
gttgccccggatactgagattttctgtgagggggaacctgtgagaagggaggatgaggac
aggcttgatgaagtaggatatgatgacgttggtggtgttcggaagcagatggctcagatt
cgtgagttagtggagctgccattaaggcatcctcaacttttcaagtcaattggtgtgaag
ccaccaaagggaattttgctttatggacccccaggttctggaaagacattgatagctaga
gctgttgctaatgaaactggtgcatttttcttttgtatcaatgggccagagataatgtcg
aaattagctggggagagtgaaagcaatctgaggaaggcatttgaagaagctgagaagaat
gctccttctatcatctttattgacgaaattgattcaattgctcccaagcgtgaaaagact
catggtgaggttgaaagacggattgtctcacagcttttaactcttatggatgggctcaaa
tctcgggcacatgttattgttattggggctactaatcgtccaaacagtattgatccagca
ttgagaaggtttggaaggtttgatagggagatagacattggtgtccctgatgaagttggg
cgccttgaagttttacgaatccatacaaagaatatgaagctctctgatgaggttgatctg
gaaaggattgcaaaagatacccatggttatgttggtgctgatcttgctgccttatgtact
gaagctgcactccagtgcatcagagaaaagatggatgtgatcgacttggaggatgattct
attgatgctgagatacttaattccatggctgttacaaatgagcacttccaaactgccctt
ggaactagcaacccgtctgctttacgagaaacggttgttgaagtgcccaatgttagctgg
gaagacattggtggccttgagaatgttaagcgggagcttcaggagactgttcaatatcct
gtggaacatccagagaagtttgagaagtttggcatgtcaccttctaaaggtgtcctcttc
tatggccctcctggatgtgggaaaactctactagctaaagcaattgcaaatgaatgtcaa
gcaaacttcataagcgtcaagggtcctgaattactcacaatgtggtttggtgagagtgaa
gccaatgttagagaaatttttgacaaggcccgacaatctgcaccatgtgtccttttcttt
gatgagcttgactctattgctactcagagaggaagcagtgttggtgatgctggcggcgca
gctgatcgggttttgaaccagcttcttactgaaatggatggcatgtcagcgaagaagact
gttttcataattggggccaccaacagacctgacattattgacccagcactcctgcggcct
ggccgtcttgaccaattgatttatattcctcttccagatgaagagtcacgtcatcaaata
ttcaaagcttgtctgaggaaatcacctatctctaaagatgttgatttgagggcattggcc
aagtatactcaaggattcagtggtgctgatattactgaaatttgccagcgggcatgcaaa
tatgcaataagggagaatatagagaaggatattgagaaagagaggaggagaagggagaat
cctgaggcaatggatgaggatgttgaggatgaagtggcagagatcaaggctgctcatttt
gaggagtctatgaaatttgctcgcaggagtgttagtgatgccgacattcgcaaatatcaa
gcatttgctcaaacgttgcagcaatctaggggattcgggtcagaatttaggttttccgag
acaaggaccagtggcgcagcctctgatccattcgctacttcagctgggggggctgatgaa
gatgatctgtatgattag
DBGET
integrated database retrieval system
