Manihot esculenta (cassava): 110626317
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Entry
110626317 CDS
T05761
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110626317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110626317
Spliceosome [BR:
mesc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110626317
Complex C
U5 SnRNP specific factors
110626317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
110626317
NCBI-ProteinID:
XP_021627832
LinkDB
All DBs
Position
11:complement(6958244..6969874)
Genome browser
AA seq
2356 aa
AA seq
DB search
MWNNNGEAHIAPPGTGGPPVPPPPVPAQPSYTVLAPQTPPTPAEAEAKLEEKARKWQQLN
TKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYK
LLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHF
KRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLEMDEEEDSAVYTWFYDHKPLVKTKLING
PSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPL
YRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMFIKA
EDPDLPAFYYDPLIHPITSTNKERREKKAYDDDEDDDFLLPEGVEPFLHDTQLYTDTTAA
GISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELH
HRPPKAQKKKHLFRSLAATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDY
NFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQY
TFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFF
LRGIVPLLERWLGNLLARQFEGRHSKGTAKTVTKQRVESHFDLELRAAVMHDVLDAMPEG
IKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRER
IRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESR
KFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSR
IKRHLLTQRAFKEVGIEFMDLYSALIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWI
KPADSEPPPLLVYKWCQGINNLQGIWDTGEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLV
LDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASE
IAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRLHILFRFTHEEARDLIQRYLTEHPDP
NNENMVGYQNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSK
DNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKV
FENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRI
KIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSH
EEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRI
NTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALG
GVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWS
PTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQ
ELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKASNK
YWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWF
PGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWF
VDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKW
KTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKI
EKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKT
IITEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPP
SQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAIS
ATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQV
KEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTNHARI
LENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKV
QMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGIKLGTPREYYHEDHRPTHYLEFSN
LEEGDVAEGDREDTFT
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaataatggagaggcgcatatcgcgccgccggggactggtggtccgccggta
cctccaccacctgtcccggcacagccttcatatactgtgcttgcaccgcaaacacctcca
acgccggccgaggcggaggccaagctggaagaaaaggcacgtaaatggcagcagcttaat
acgaagaggtacagcgataagaggaagtttggattcgttgagacgcagaaagaagacatg
ccgccggagcatgtcaggaaaattatcagagatcatggggacatgtcctccaagaaatat
cgtcacgataaacgtgtgtatcttggagcacttaaattcataccacatgcggtttacaag
cttcttgagaatatgccgatgccctgggagcaggttcgtgatgtgaaggttctataccat
atcactggggcaatcacttttgtgaatgaaattccatgggttgttgaacctatttattta
gctcagtggggtacaatgtggatcatgatgagaagagagaagagggatcgacgccacttt
aagagaatgcggtttccaccatttgatgatgaggaacctccattggactatgctgataat
ttgttagacgttgatcctctagagcctattcaattggagatggatgaagaagaagattct
gcagtatacacttggttttatgaccataagccccttgtcaaaacaaagcttatcaatggt
ccaagttacaggaagtggcatctctcccttcctatcatggcaactcttcatcggctggca
ggacagctcctatcagatctaattgatcgcaattatttctacttgtttgacatggagtca
ttctttacagctaaagccttaaacatgtgcatacctggtggtcctaaatttgagcctttg
tatcgtgacatggagaagggggatgaagattggaatgagttcaatgacattaacaagctc
attattcggtcacctctcaggacagagtacagaattgcattccctcatctttataacaat
aggcccaggaaagttaagctttgtgtgtatcacactcccatggtcatgttcattaaagct
gaggatcctgatttacctgctttctattatgatccattgatacatcctataacctccacc
aacaaggaacggcgagaaaagaaggcttatgatgatgatgaggatgatgatttccttttg
ccggaaggagttgaaccttttctgcatgacactcagctttatacagacaccacagctgct
ggtatttccctgttatttgcaccacgaccatttaacatgagatctggtcgtatgcgacga
gcagaagatataccccttgtgtctgagtggtacaaggagcactgtcctccttcatatcca
gtgaaagttagggttagctatcagaaactgttgaaatgctttgttttgaatgagttgcat
cataggccacccaaagcgcagaagaagaagcacttgttccggtctctagctgcaaccaaa
ttcttccaaacaacagaacttgattgggctgaagcaggtttacaagtttgtaagcagggg
tacaacatgctgaacctgttgatacacaggaaaaatttgaattaccttcatcttgattac
aattttaacttaaagcctgtgaaaacccttactacgaaagaacgtaagaaatctcggttt
ggtaatgcttttcatctctgccgtgaaatcctgcgtttgacaaagcttgttgttgatgcc
aatatccagttccggctgggtaatgtcgatgcattccagctggctgatggtctgcaatat
acattttcccatgttggtcagttgactggcatgtatcgctacaagtataggctgatgcga
cagattagaatgtgcaaagacttgaagcatttgatatattaccgcttcaatactggtcca
gtagggaaaggacctggctgtgggttctgggcaccgatgtggagagtatggttgtttttc
cttcgtggcattgtgcctcttctagaaaggtggttaggaaatctccttgcacgacaattt
gaaggccgccattcaaaaggcacggctaagactgttacaaagcaacgtgttgagagtcac
tttgatttggagcttcgtgctgctgtcatgcatgatgtgcttgatgccatgccagagggc
attaagcaaaataaagctagaaccatactacagcacctaagtgaggcctggcgttgttgg
aaagccaacattccctggaaggttcctggcttgccagttcctattgaaaacatgattctt
cgatatgttaagtcaaaggcagactggtggacaaatgttgctcactataatcgtgagcgt
ataagaagaggtgcgactgttgataagacagtttgtcgaaaaaatctaggaagattgact
cgcctttggctaaaggcagaacaggaacggcaacacaattatttgaaagatggtccatat
gtcacaccagaagaagcagttgccatttatacgacaactgtgcattggctggagtccaga
aagttttctcccattcctttccctccactatcttacaagcatgacaccaagctacttatc
cttgctttggaaaggttgaaggagtcatatagcgtggctgtcagattaaaccaactgcag
agagaagaactgggtctcattgaacaggcgtatgataatccgcatgaggctttgtcaagg
attaaacggcacctgcttactcagcgtgccttcaaagaagttggcatagagttcatggat
ttgtatagtgctttgattccggtttatgaaattgagcctcttgaaaaaataacagatgca
tatcttgaccaatatctttggtatgaaggtgacaagcgccacctctttccaaactggatt
aagcctgcagattccgagcctccaccattgcttgtttataaatggtgtcagggtataaac
aatttgcagggtatctgggacacaggtgaggggcagtgtgtagttatgctacaaacaaag
tttgagaagttctttgaaaagattgacttgaccatgttaaacaggcttcttcgtttggtg
cttgatcacaatattgcggattatgtcactgcaaagaacaatgttgtgttgtcctacaaa
gatatgagccacacaaactcatatggtttgatacgtgggttgcagtttgcttcctttgtt
gtacaatattatggacttgtgctagatctcttacttcttggattgactcgagccagtgag
attgctggtccaccacaaatgccaaatgaattcatcacttattgggatacaaaagttgag
acaaggcacccaattcgattatattctaggtatatagacaggttgcatatattattccgc
ttcactcatgaagaggctcgagatctcatccagcgatatcttactgagcatcccgatcct
aacaatgaaaacatggttgggtatcaaaacaagaaatgctggcccagagatgcaagaatg
aggcttatgaaacatgatgtaaatctcgggagaagtgtattttgggatatgaagaaccgt
ctccctcgaagcatcacaactttggagtgggagaacagctttgtttctgtttacagcaag
gacaatccaaacttgcttttcagcatgtgtgggtttgaagttcggatacttcctaaaata
aggatgactcaggaagcattcagcaataccagagatggtgtttggaatttgcaaaatgag
cagactaaggagcgaacagctgttgctttcctacgagttgatgatgagcacatgaaggtg
tttgagaatcgtgtgaggcagatccttatgtcttcagggtcaactactttcacaaaaatt
gtcaacaaatggaatacggctctgataggtttgatgacttacttccgcgaagctactgtg
catactcaagagttactagatttgctggttaaatgtgaaaacaaaatccaaactcgtatt
aagattggtttaaactcaaagatgccgagccgatttcctcctgtcattttctacacgcca
aaagaaattggaggacttggcatgctatcgatgggccacatattgatcccacaaagtgat
ctgcgatatagccagcagacagatgttggtgtaactcacttcaggagtggaatgagtcat
gaagaagaccaactgattccaaatctttatcgctatattcagccatgggagagtgagttc
atcgattcgcagcgtgtctgggcggaatatgcccttaagaggcaggaagcacaggcacaa
aataggcgtcttaccctagaagatttggaagattcttgggataggggaattccgcgtatt
aataccttatttcagaaggaccgtcatactcttgcatatgacaaaggatggagagtgcgc
actgatttcaagcaataccaagttctgaagcagaatcctttctggtggactcaccagagg
catgatgggaaactctggaacttgaacaattaccgaactgatgttatacaagctctgggt
ggtgttgagggaattcttgagcatactttgttcaaaggaacatatttcccaacttgggaa
ggtctcttttgggagaaggcatctgggtttgaagaatcaatgaagtacaagaagcttaca
aatgctcaaagatctggtctcaatcaaattcccaatcgaagatttaccctttggtggtca
cccacaataaatagggccaatgtctatgtgggttttcaagtgcaattagatctaaccggc
atcttcatgcatggaaagatcccaaccttgaagatttcattgattcagatattccgagct
catctgtggcaaaagattcatgagagtgttgtgatggatctgtgccaagtcttagatcag
gagttggatgctctggaaattgaaaccgtgcaaaaggaaacaattcatccaaggaagagt
tacaagatgaacagctcctgtgctgacgttctcctatttgcggctcacaggtggcctatg
tcaaagccaagtcttgtggcagagtcaaaagatgtgtttgatcagaaagccagcaataaa
tattggatagatgtacagctcaggtggggtgactatgactctcatgatattgagcgttat
acccgggccaaatttatggattacacaacggataacatgtctatatatccatctccaact
ggggttatgattgggcttgatctggcatacaacttgcattctgcatttggtaactggttt
cctggatcaaaaccactgctagctcaggccatgaataaaataatgaagtcaaacccagct
ttgtatgtcttgagggagcggataaggaaaggtttgcagttgtattcttctgagcctaca
gaaccttatttgtcatcccaaaactacggtgagatcttcagcaatcagattatatggttt
gttgatgacaccaatgtgtatcgtgttacaattcacaagacatttgagggaaaccttaca
acaaaacccataaatggtgcaatatttatattcaatccaagaactggccagctgtttctg
aaggtcatccacactagtgtatgggcaggacagaagcgtcttgggcaacttgctaagtgg
aaaactgctgaagaagttgcagctcttgtacggtctctgcctgttgaagaacaaccaaaa
caaattattgtgactcgtaaagggatgcttgatccattggaggttcacttgcttgatttc
ccaaatatagttattaaaggaagtgagttgcagttgccattccaagcatgcttgaagata
gagaaatttggtgatctgattttgaaggcaacagagccacaaatggttctgttcaatatt
tacgatgattggctgaagagcatctcatcatacactgcattttcccgacttattttgatc
cttcgtgcacttcatgtgaataatgagaaggcaaagatgctactcaagcctgataaaacc
atcattactgagccgcaccatatatggccttctctcactgatgatcaatggatgaaggtt
gaggttgctttaagggatctcatactttcagactatgccaagaaaaacaatgtaaacacc
tcagcgctgacacagtctgagatccgtgatattattcttggtgctgagattactcctcct
tctcaacaaaggcaacagatagcagagatagagaaacaggccaaagaagccagtcagtta
acagcagtcacaacaaggacaacaaatgtgcatggtgatgaactcatcgtcaccacaact
agtccctatgagcaggctgcatttggttccaaaaccgattggcgtgtccgagcaatatca
gctacaaatctctaccttcgggtcaatcacatatatgtcaattcggaagatattaaggaa
acgggatatacttatatcatgcccaagaacattttgaagaaatttatctgcatagcagat
ttgcgtactcaaatagctgggtacctttatggtattagtcccccagataaccctcaggtg
aaggagatccggtgtattgccatgccaccacagtggggtactcatcaacaagttcatctc
ccgtcagcactccctgagcatgatttcctcaatgatctggagcccttgggatggatgcac
acccaaccaaatgagcttcctcagttatcaccacaggatctgacaaatcatgctcggatt
ttagagaacaacaagcaatgggatggggagaagtgcatcatcttgacttgcagttttact
cctggatcatgctcattaactgcatataagcttaccccgagtgggtatgagtggggtcgt
gtcaacaaggacactggaagcaatcctcatggttacttgccaactcattatgagaaggtc
cagatgctattgagtgatcgtttccttggtttctatatggttcctgataatgggccatgg
aattacaatttcatgggggtgaagcatacagtgagcatgaaatacggaatcaagctgggg
acaccaagggagtattaccacgaggaccatagaccaacccactacctggagttcagcaac
ttggaggagggtgacgttgctgagggtgaccgggaagataccttcacttaa
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integrated database retrieval system
