Manihot esculenta (cassava): 110626390
Help
Entry
110626390 CDS
T05761
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
mesc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110626390
09123 Folding, sorting and degradation
03018 RNA degradation
110626390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110626390
03041 Spliceosome [BR:
mesc03041
]
110626390
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110626390
mRNA cycle factors
Stress granule specific factors
110626390
Spliceosome [BR:
mesc03041
]
Complex C
Other components
Complex C specific factors
110626390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RBD_DEAH11
RRM_RdRP1_2
RRM_5
RRM_occluded
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
110626390
NCBI-ProteinID:
XP_021627930
LinkDB
All DBs
Position
11:complement(3083704..3087920)
Genome browser
AA seq
561 aa
AA seq
DB search
MFDFRARKSMAAAPSLQPPGDLRQRASLYVGDLDLEVTEMDLKTAFCSVCHFFTLRLCRC
AYTGKSLCYGYVNFYSHNQAYEALHKLNHTYLKGKPMRLMWSQRDPFARKSGIGNLFVKN
LVSSIDSARLESMFCKFGTILSCKVVEERGKSKGFGFVQFDSENSALAARTALHNTIVEG
KKLYVSKFVKKSDRTAATIYEESEFTNLYVKNLADNVTEDTLQNMFSIFGKVYNVVIMKD
HDGKSRGFGFVNFDSPEGAKKAVDALNGSLLGSRTLFVGRAQNKAERIKILQHERKDIFS
NHIEKLRLSNVYVKNLDECIDDNKLQEIFSTCGKIVSAKVMRYDNGVSRSFGFVCFSSPG
EAKKALNTLNGIMLEGKSLYVAIAQSKKDRRLELEKYFSARQSQSLYPSNCNVVAPPIGP
VYYNLSTFHPPIPFLQHQISYQNFGATMGGQYPLAAENYQQHFCSYIPLGQTHQSTQNLL
AQSCQQLSVKRVTSYLRDRDLNDGHSGIQNFCPRKGWNNKAGSKSRGSQAITCFAATKSP
DNCKEDIGNCLHPLGNVQPDC
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtttgattttagagcaagaaaatcaatggcggcggcaccgtcattacagccaccgggg
gacctgagacagagggcatcgctgtacgtgggtgatttggacctggaagtcactgaaatg
gacctgaaaactgcgttttgctcagtgtgtcactttttcacccttcgtctctgtcgttgt
gcttacaccggcaagtctctttgttatggttatgtcaacttctactctcacaaccaagca
tatgaagctctacataaactaaaccatacatacttgaagggaaaacccatgaggttaatg
tggtctcagagggacccttttgcaagaaagagtggcattggcaatctttttgtgaagaat
ctagtatcttcaattgatagtgctcggttagagagcatgttctgcaagtttgggactata
ctttcttgcaaggtggttgaagaacgtggcaagagcaaaggttttgggtttgtccagttt
gattcagagaattctgccttggctgctcgaactgctcttcataatactatagttgaagga
aagaaattgtatgtatccaaatttgtcaagaaaagtgacaggacagcagccacaatttat
gaagaatcagaatttacaaatctatatgttaaaaatctggctgataatgtgacagaggat
acccttcagaacatgttttctatatttgggaaggtttataatgttgtcatcatgaaggat
catgatgggaaatcaagaggttttggatttgtcaactttgattcaccagaaggtgccaag
aaagctgttgatgctctgaatggttctctacttggttccaggactttgtttgtgggaaga
gcccaaaacaaagctgagagaataaagatattacagcatgaacgaaaggatattttcagc
aaccatatagagaagttgagattatccaatgtgtatgtgaagaatcttgatgaatgcatc
gatgacaacaaattacaagaaatattcagtacctgtggaaagatagtttcagcaaaagtg
atgcggtatgataatggggtaagcagaagctttggatttgtgtgcttttcaagtcctgga
gaagcaaagaaagctttgaatactctgaatggaatcatgttggaggggaagtctctctat
gtggcaatagctcagagtaaaaaagatcgccgcctggaactggagaagtatttttctgca
cgacaatctcagtcattatatccttctaactgcaatgtcgttgcacctccaattggccca
gtctattacaatttgtctactttccatccaccaatccctttcctgcagcatcaaatctca
taccaaaattttggtgcgacaatgggaggccaatatcctttggcagctgagaattaccag
caacatttttgctcatatattccattgggacaaacgcaccaaagcactcagaatctcttg
gctcagtcctgccaacagctttctgtgaaacgtgttacctcatatcttcgtgatcgagat
ctgaatgatgggcattctggaattcaaaatttttgccctaggaaagggtggaataataaa
gcaggaagtaagtccagaggatcacaagctatcacatgttttgctgccacaaaatctcct
gataactgcaaggaagacataggaaattgtctccatccccttgggaatgttcagcctgat
tgttaa
DBGET
integrated database retrieval system
