Manihot esculenta (cassava): 110626418
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Entry
110626418 CDS
T05761
Name
(RefSeq) THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
mesc03015
mRNA surveillance pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110626418
09122 Translation
03013 Nucleocytoplasmic transport
110626418
03015 mRNA surveillance pathway
110626418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110626418
03041 Spliceosome [BR:
mesc03041
]
110626418
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110626418
TREX complex
110626418
Spliceosome [BR:
mesc03041
]
Complex C
Other components
EJC/TREX
110626418
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110626418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Btz
RRM_3
Motif
Other DBs
NCBI-GeneID:
110626418
NCBI-ProteinID:
XP_021627992
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All DBs
Position
11:complement(29742114..29744876)
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AA seq
239 aa
AA seq
DB search
MSSALDMSLDDIIKNNKKSGSGNARGRGRPSGPGPARRLANRGANRAAPYTASKAPETTW
QHDMFTDQGMAYGQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR
SGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAAPPANNVSFGNS
NGVPRGGQGRGGTTGRPRGGGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQTN
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcgctttggatatgtctctcgatgatatcatcaagaacaataaaaagtccgga
tccggtaacgcccgaggccgcggccggccttccggacctggacctgctcgccgtttggcc
aaccgtggcgctaatcgagctgcgccgtataccgccagtaaggcgcctgaaacgacgtgg
cagcacgacatgtttacggatcagggtatggcgtacgggcaagcaggccgggcttccgct
atagagaccggaacgaagctttacatttctaatctagattatggtgtctcaaatgaagat
attaaggaattgttttcggaagttggtgatttgaagcggtactcaatccattatgatagg
agtgggagatcgaagggaacagcagaagtagtcttctctcggcgaacagatgccttggct
gctgttaagagatataacaatgttcagcttgatgggaaaccgatgaagatagagattgtg
ggaacaaatattgctactcctgctgcacctcctgctaataacgtttcttttggaaattca
aatggagttcctagagggggacaaggaagaggtggcaccactggacggccacgcggtggt
ggtggccgtggatttggaaggggtcgtggacgtggaaggggtcgtggtgagaaagtatct
gcagaagatcttgatgctgatctggagaagtatcattcagaagcaatgcagacgaattaa
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integrated database retrieval system