Manihot esculenta (cassava): 110626483
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Entry
110626483 CDS
T05761
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
mesc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110626483
03083 Polycomb repressive complex
110626483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110626483
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
110626483
Histone modification proteins
HAT complexes
HATB complex
110626483
HDAC complexes
Sin3A-HDAC complex
110626483
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
110626483
PRC2.2
110626483
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
110626483
Heterochromatin formation proteins
Other heterochromatin formation proteins
110626483
Chromatin remodeling factors
NuRD complex
110626483
NuRF complex
110626483
NuRF complex (fruit fly)
110626483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
WD40_RFWD3
EIF3I
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_RIG_1st
WD_LRWD1
eIF2A
MIOS_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
NBCH_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
110626483
NCBI-ProteinID:
XP_021628093
LinkDB
All DBs
Position
11:32758887..32761736
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDDEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLDDAENDARQYDDDRSDFGGFGAANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACTPDLRLRGHSTE
GYGLSWSNFKQGHLLSGSDDAQICLWDINSTPKNKSLDAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRTPGNTKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDDEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDIPGDES
TKGS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagacgatgaggagatgaggggggagatagaagaaagactcataaacgaagaa
tacaaaatatggaaaaagaacactcctttcctctacgatctggtcatcactcatgctctc
gagtggccctcccttaccgtcgagtggttacccgaccgcgaggagcctcctgggaaggat
tactccgtacagaagatgattctcggtactcacacctccgagaacgagccaaactacctc
atgcttgcccaggtccagcttcccctcgatgatgctgagaacgatgcccgccaatacgac
gacgaccgctctgattttggcggcttcggagctgccaatggcaaggtccaaataattcag
caaatcaatcacgatggggaggttaacagggctcgttatatgcctcaaaacccttttatt
attgctactaagactgttagtgctgaagtttatgtctttgactacagcaaacacccatca
aagccccctttagatggtgcttgtactcctgatttgagattgagaggccatagcactgaa
ggttatggtttatcttggagtaactttaaacaaggccacttgcttagcggttccgatgat
gctcaaatttgtttgtgggacatcaattccactcctaagaacaagtctctcgatgctatg
caaatttttaaggttcatgaaggtgttgtagaagatgttgcttggcatctgagacatgaa
tatttatttggctctgttggggatgatcagtacctgcttatatgggatctccgaactcca
ggaaacacaaagcctgtccaatcagttgttgcacaccagagtgaggttaactgcttggct
tttaatcctttcaatgaatgggttgttgcaacgggatccactgacaaaactgtcaagtta
tttgatttacggaaaatcagcacagcgctacacacgtttgactgtcacaaggaggaggtt
ttccaagttggttggaatccaaagaatgaaactatcttagcgtcttgttgccttggtagg
aggctcatggtctgggatcttagcaggattgatgatgaacagacaccagaagatgctgaa
gatggccctccagagttgctttttattcatggtggccacacaagtaaaatatcagatttt
tcatggaatccatgtgaagactgggtgattgcaagtgttgctgaagacaacatccttcag
atatggcaaatggcagagaatatctaccatgatgaagatgacatacctggagatgaatcc
accaaaggatcctaa
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