KEGG   Manihot esculenta (cassava): 110626547
Entry
110626547         CDS       T05761                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
mesc  Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mesc03036]
    110626547
   03400 DNA repair and recombination proteins [BR:mesc03400]
    110626547
Chromosome and associated proteins [BR:mesc03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    110626547
DNA repair and recombination proteins [BR:mesc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     110626547
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT_EZ
Other DBs
NCBI-GeneID: 110626547
NCBI-ProteinID: XP_021628205
LinkDB
Position
11:3204728..3221114
AA seq 1152 aa
MADPSQLIKHIESYVDSSRSPTQQASSLDAIVSLLKNDAVTIGSLVKEMEMYLTVTDDIL
RARGILLLGEALNRLSSKPLDNATIHSLITFFTERLADWRALRGALVGCLALLRRKSIGI
VTNIDAKAVAKSYLQNLQVQSLAQHDRKLCFELLECLLEHYPEAAASLGEDLIYGICEAI
DGEKDPQCLMLTFHIVELLVQLFPDPSGPISSFAGDLFGILGCYFPIHFTHPKAEDIDVQ
RDDLSRALMLAFSSTPLFEPFAMPLLLEKLSSSLPSAKVDSLKYLSCCTLKFGADRIAKH
AGAIWSSLKDAIYSSGEELIPTFNSEPTSNSDFQKNQIAAEALALLEKVIVQNTDLFLSM
IIGDEEVNMIFNNITNYESCNAISLQSKQKLHMVGHILNVSAKASLSSCNRVFENFFPRL
MEVLVLSVEKTSGACHSNDSCVNSSKISYGSLYLCVELLGACRDLFTTSENLTPQIISPN
EKCCCLLQCYSTSLTRIFSSILATCTSGPSYDADMYLGVKGLQILATFPGGYLLMSKSTF
DDVLMTFMSIITVDFNKTLLWKHALKALVNIGSFIHGCNESEQASYMDIVVDKIILLALS
ANNSMPWPLKLTAISSISTSGQKYMLKIVLWLEEMILTNLSEFYVEGHQKSAEIIIQLFE
CYSNELLPWIQKNEGLEEVLQFVVNIWNQIESCMAFSVRVHEKELIDVTMKFMKLAVACC
SVESQNMIIHKAFSVLSSSPSLQLKESLSDISVQRERLAPTQETDKFSTRDEWILSLFAS
VIIAVRPQTHIPNTRTVLHLFITALLKGYVTAAQALGSLLNKLDLKSNGTSISGHCTLEE
AIDIIFSSKSFDNVPLGGHGITNNGDEISFPNLCLGAASNGLQQINVIVGLAWVGKGLLM
RGHEKAKNITMVFLKCFLLDSGIGTLPLKQVSENSCKQDVHHSVMKASADAFQILMTDSE
LCLNRKFHAIIRPLYKQRFYSSLMPILQPLINEADSSFSRSMLYRAFAHVIIDTPLSVVL
NDAKKLIPLLLDGLALLCKDILDKDIMYGLLLVLSGILTHKNGKEAAIDNAHIIIKCLIE
LVEYPHMMLVRETAIQCLVAMSELPHTRIYPLRIQVLGAISKALDDPKRAVRQEAVRCRQ
AWASIASRSLHF
NT seq 3459 nt   +upstreamnt  +downstreamnt
atggcagacccgagccagctgataaagcatatcgaatcctatgttgactcgtctcgctct
ccaactcagcaggcttcaagtctggatgcaattgtttccctcttgaagaatgatgcagta
actataggatcattggttaaggaaatggagatgtatttgactgtaacagacgacatacta
cgtgcaagaggcatccttctccttggagaagcgcttaaccgtctgtcatcaaagccacta
gacaatgcaactatacatagcttgataacattcttcacagagcgactggcagattggaga
gctttacgtggtgcactcgttggttgcttggcattgttgaggaggaaaagtattggtata
gtcactaacatcgatgcaaaagctgttgctaagtcttatttacagaatttgcaggtgcaa
tctttagctcagcatgacaggaagctttgctttgaacttctggaatgcctactggaacac
tatcctgaagctgctgcttcactgggcgaggaccttatttatggaatctgtgaagctatt
gatggagaaaaggatcctcaatgtctaatgctaacatttcacattgtggagctgctggtt
caactatttccagatccttctggtccaatttcaagttttgctggtgacctttttggcatt
ttgggctgttactttcccattcattttacacacccaaaagctgaggatattgatgtgcaa
agggatgatctctcaagggcattaatgcttgcattttcttccacgccactttttgagcca
tttgccatgccattacttcttgagaaactttcttcctccctgccctctgcaaaggttgat
tctttgaagtatcttagctgctgcacattgaagtttggagcagacagaatagcaaaacat
gctggagctatttggtcttcattgaaagatgcaatatatagttcaggagaagagcttata
ccaacatttaattcagaaccaacgagtaattctgattttcagaagaatcaaatagcagca
gaggctttagcgctgttagagaaggttattgtccaaaatactgatttgttcctaagtatg
attattggtgatgaagaggtaaacatgattttcaacaacatcactaattacgagagttgc
aatgcaatttccttgcaaagcaagcagaagctgcatatggttggtcatatccttaatgtt
tctgcaaaagcttctctttcctcctgcaatagggtatttgaaaacttcttcccccgcctg
atggaggttctagttctttcagttgaaaaaacatctggggcttgccattcaaatgacagt
tgtgtaaactccagtaaaattagttatggatctttatatctctgtgtcgaacttcttgga
gcatgtagagatttgttcacaacgtctgagaatctcacgccacaaattatatctccaaat
gagaaatgttgttgtttgcttcaatgctattcaacttctttaaccaggatcttcagttct
attttggcaacttgtactagtggacctagttatgatgcggatatgtatcttggagtgaag
ggtttgcagattttggcaacattccctggaggctatttgctaatgtcaaagtcaacattt
gatgatgtcttgatgacattcatgtcaatcatcactgtggatttcaacaagacattgttg
tggaaacatgcgttgaaggcactagtaaatattggctcttttattcatggttgcaatgag
tctgagcaagcaagctatatggatatagttgttgataagatcattttgttggcattatct
gccaataatagtatgccatggccactcaaactaacagccatctctagcattagtacaagc
ggacagaagtatatgctgaaaattgttctttggctggaagaaatgatactcaccaatcta
tctgagttttatgtcgaagggcatcaaaagtcagcagagatcataattcagctatttgaa
tgttattctaatgagttgcttccatggatccagaaaaacgaaggacttgaggaagtgttg
caatttgtggtcaatatatggaaccaaattgaaagttgtatggctttcagtgttcgggtg
catgaaaaagagcttattgatgttacaatgaagtttatgaagcttgcagttgcatgctgt
tcagtggaaagccagaacatgataattcataaagcctttagtgtactttcttcaagccct
tctttacaactgaaggaatccttgtctgacatttcagtccaacgggaaaggttggcgcca
actcaagaaacagacaaattttccacaagagatgaatggattctttctttatttgcctca
gtgattatagcagtgcgtccacaaacacacattccaaatacaagaacagtattacattta
tttataactgctctgcttaagggttacgttactgcagctcaagccttgggttctctgctt
aacaaattggatctgaagtcaaatggtacaagtatttcaggtcattgtaccttagaagaa
gcaattgatataatttttagctcaaagtcttttgacaatgttcctttggggggacatggt
ataacaaacaatggtgatgagatcagtttccctaatttatgcctgggagctgcaagcaat
ggactgcaacaaatcaatgtcattgttggactggcatgggtagggaagggcttgcttatg
cgaggccatgaaaaggctaaaaacataactatggttttcctaaagtgcttcttgttggat
agtggaattggtaccttaccactgaaacaggtctcagaaaacagttgcaaacaagatgtg
catcattctgtgatgaaagcttcggcagacgcatttcaaattcttatgaccgattctgaa
ctttgtttgaaccgcaaattccatgcaataatacgaccactttacaagcaacggttttac
tctagcttgatgcctatcctgcagccattaataaatgaagctgattcatcattctcaaga
tctatgctgtatcgagcttttgctcatgttataattgatactccactaagcgttgtcttg
aatgatgcaaagaagttaattccattacttctggacggcttagccttgttatgcaaggat
attttggataaagatatcatgtatggtctcctattggtcttatcaggaatactcacacat
aaaaatgggaaagaggccgcgattgataatgctcacattatcattaaatgcctaattgaa
cttgttgagtaccctcatatgatgcttgtccgagagacggcaattcaatgtcttgttgcc
atgtcggaactgcctcacacaagaatttaccctttgagaatccaggtattaggagcaatt
tctaaagcacttgatgatccaaagagggctgttcgtcaagaagctgttaggtgccggcaa
gcatgggcatcaattgcatcaagaagtcttcacttctga

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