Manihot esculenta (cassava): 110626555
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Entry
110626555 CDS
T05761
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110626555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110626555
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
110626555
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_16
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
110626555
NCBI-ProteinID:
XP_021628221
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Position
11:13509944..13518522
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AA seq
874 aa
AA seq
DB search
MEAALIVNKTPGESYSKGHKRKKLSNDGDGSGSSSKVVDYSDPFAISSFIDKLDSGRYGS
VTKDIQALISRRLQLLSPHLKKHPSLSSVLLDGKEVPSEDNSRAQECVVDLEDDSVTNDP
PTAPRPVVILDSDDEDDGDSRSIYPFQKVVLPSSAYPFQEVVLPSSAGQLMVDAAIHTHA
DRENNEKAICLAGETNERNKGVFVGVEEYDYNSQSKTEDDGLGDIWKEMSVALECTKDVA
EYPSSDAHTQEDEEYCDHSFVLKDDLGYVCRICGVIERGIETIIEVQFNKKKSTRTHASE
SQHAKGRDSNEIVGIELCEQDLMVTDISAHPRHMKKMKPHQVEGFNFLRSNLVSDKPGGC
ILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQTWQVEDFPLYDFY
SVKADGRTQQLVVLKKWVEQRSILFLGYKQFSSIICDNINNKVAAACQEILLKRPSILIL
DEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSRAI
AKRIMSKVHIQGVKKHLKPGEAVFYDLVEHTIQNDEDFRRKVAVIQDLREMTSKVLHYYK
GDFLDELPGLVDFTLVLNLSPRQKKEVEKLKKKWAMKFKRSSVGSAIYLHPNLYNVSENS
NLNDGKMDEFLEEMNVRDGVKAKFFITMLNLCEAAKEKLLVFSQYLTPLKFLERLAAKVK
GWVLGKEMFVISGDSSSDQREWSTEQFNHSIDAKVFFGSIKACGEGISLVGASRIIILDV
HLNPSVTRQAIGRAFRPGQKNKVYAYRLIAADSPEEEDHRTCFRKETISKMWFEWNEYCG
YQDFEVEAVDLKECGDPFLESPLLGEDIRKLYKR
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgctctgatcgttaacaagactcctggcgagtcatattcaaaaggacacaaa
aggaaaaaactatctaacgatggagatggtagtggtagctcttctaaggttgttgattat
tctgatccatttgccatatccagcttcattgataagttagattctggtagatatggtagt
gtgacaaaagacattcaagctctcatttctcggaggcttcaactgcttagccctcatttg
aagaagcatccttcactttcaagtgtattactggatgggaaagaggtcccgagtgaagat
aattcaagggcacaggaatgtgtcgttgatttggaggatgatagtgttacaaatgatcct
ccaacagccccaaggcctgttgtaattctggattcagatgatgaagacgatggagatagc
aggtcaatttatcccttccagaaggttgtcttgccaagttctgcttatcccttccaggag
gttgtcttgccaagttctgctgggcaacttatggtggacgcagctattcacacccatgct
gacagagaaaataatgagaaggcaatctgtttggctggtgaaaccaatgagagaaataaa
ggtgtttttgttggtgtagaggagtatgattataatagtcaatccaagactgaagatgat
ggtcttggagacatttggaaggagatgtcagtggcactggaatgtactaaggatgttgct
gaatatccttcatctgatgcacacactcaagaagatgaagaatattgcgatcattctttt
gttttgaaggatgatcttggctatgtttgtcgcatttgtggggtcattgagagaggaatt
gagaccataatcgaggttcagtttaacaaaaaaaaaagtacacgaacacatgcatctgag
tcacagcacgccaagggcagagattcaaatgagatagttggaattgaattatgcgagcaa
gatttgatggtgactgacatctctgctcatccaaggcacatgaagaaaatgaaacctcat
caggtggaaggtttcaatttcctccgaagtaacctggtgtctgataaacctgggggctgc
atcttggcccatgctcctggttctggaaagacattcatgatcattagtttcatgcagagt
ttccttgctaaatatccacaagctagaccgctagtggtgcttccaaaaggaattttagct
acgtggaaaaaggagtttcaaacgtggcaggttgaggatttcccactgtatgacttttat
agtgtgaaagcagatggtcgtacacagcaactggtggtcttgaaaaagtgggtggagcag
aggagtattcttttcttagggtacaaacaattctcatctatcatttgtgacaacataaat
aataaggttgcagctgcctgtcaggaaatattgctcaaaagaccttcaatactcattttg
gatgaagggcatactcctaggaatgagaacaccgatgttctccagtcactggctaaggtg
cagacacctcggaaggtggtgctctctggcaccctttaccagaaccatgtcaaggaggta
ttcaatatattgaatcttgttcgtccaaagtttctgaaattggacacctcccgggccatt
gccaagcgaattatgagtaaggtacatatacaaggagtgaagaagcatctcaaacctgga
gaggcagttttttatgacttggttgagcatacgatacagaatgatgaagattttagaagg
aaagtggctgtcatacaagatctccgggagatgacgagcaaggtacttcattattataaa
ggagatttcttggatgagctccctggacttgttgatttcactttagtgctcaaccttagt
ccaagacagaagaaagaagttgaaaaattgaagaaaaaatgggccatgaaatttaaaaga
agttctgttgggagtgccatttatctgcacccaaacttgtacaatgtctctgaaaattcc
aacttgaatgatgggaaaatggatgaatttttggaggaaatgaatgtgagagatggagtg
aaagccaaattcttcattactatgttgaacttatgtgaggcagcaaaagagaagctgcta
gttttcagccagtacttaacaccattgaaatttttggagagactagcagcaaaagtgaag
ggttgggtattaggaaaagaaatgttcgtgatctcaggtgattcgagttccgatcagcga
gagtggtcaacggagcaatttaaccattccattgatgcaaaagttttctttggttcaatt
aaggcatgtggagagggaatttctcttgttggggcttctcgcattataatcttggatgtt
catctgaatccatcagttactcggcaagcaatagggcgtgcattccgtccaggccaaaag
aataaagtgtatgcttatagattgattgctgcagattcacctgaggaggaagatcataga
acttgtttcaggaaagaaactatttcaaaaatgtggtttgaatggaatgagtactgtggt
tatcaagattttgaggtggaggcagttgacctgaaagagtgtggtgatcccttcttggaa
agcccgctgttaggtgaagatataagaaaattgtacaaaaggtaa
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