Manihot esculenta (cassava): 110627163
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Entry
110627163 CDS
T05761
Name
(RefSeq) regulation of nuclear pre-mRNA domain-containing protein 1B isoform X2
KO
K15559
regulator of Ty1 transposition protein 103
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110627163
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110627163
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CID
Prenyltrans
Rx_N
Allexi_40kDa
P4Ha_N
TMF_TATA_bd
Motif
Other DBs
NCBI-GeneID:
110627163
NCBI-ProteinID:
XP_021629115
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All DBs
Position
11:12454675..12464826
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AA seq
508 aa
AA seq
DB search
MGSSFNPQILVEKLAKLNNSQASIETLSHWCIFHMNKAKQVVETWDRQFHCSPREQRLAF
LYLANDILQNSRRKGSEFVGEFWKVLPDALRDVIRNGDEAGRNAALRLIGIWEDRKVFGS
HGQILKEELVGKHSDSSNRNGKNIGFKLKQPAGSTLDKIISGYQVVHGGQVDEDVTINKL
RNAISSLEKGQFHDASFVEELHGQQNILRDSIEKLTALESSRTSLVSHLRDALREQESRL
EQVRNQLQAAQSQSEHASNICQQLLRSNNVQLVAEQSLKEVNTSIASQSFIPGDREQSAP
AMYARQVSFPEKTGQIEEDPRRSAAAAVAAKLTASTSSAQMLSYVLSSLASEGVIGNPVK
ESSGGYHSEKRAKLENNQPYIPTQNSSQQPLAPFQRPESFQVANTAQQLTSNDPPPPPSS
PPPPPPLPPMAPYSIPQYMQTAGSINAVPYTYSMSQQPPPSLPGYPGVGTQMTGIAPFSM
PPTNSYPSYQSADGNLYSQPSKMPISRQ
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgggcagttcattcaatccccagattttagtggaaaagcttgccaagctcaacaattca
caggcaagcatagagacattatctcattggtgtattttccatatgaataaagcaaagcaa
gttgttgaaacatgggacagacaatttcattgctctccacgtgagcagagattggctttt
ctatatcttgcaaatgacattttgcagaatagtcgtcgtaaaggctcagagtttgttggt
gaattttggaaggttcttccagatgctcttcgtgatgtaattagaaatggggatgaggct
ggaagaaatgctgcactaagactgattggcatatgggaagacagaaaagtttttggttcg
catgggcaaattctcaaggaagagcttgtgggaaagcactcggatagtagtaatagaaat
ggaaagaatataggcttcaaactgaagcagcctgctggaagtacactggacaagataatt
tcaggttatcaagttgttcatggtggccaagtggatgaagatgttacaataaacaaattg
aggaatgctattagctctctcgagaaaggacaattccatgatgcttcatttgtggaagag
ctgcacgggcagcaaaatattttgagggacagcattgaaaaactgacagcccttgaatca
tcaaggacaagtcttgtgtctcatttgagagacgctcttcgggagcaggaatccagactg
gaacaagttcgcaatcaacttcaggctgctcaatcccagtcagaacatgctagtaatatc
tgccagcagttgctgcgttccaataatgtgcagttagtagctgagcaaagtttgaaggaa
gttaacacttccattgcttctcaaagctttatacctggggacagggaacaatcagctcca
gcaatgtatgcaaggcaggtatctttccctgaaaaaactggccagattgaggaagatccc
cggagatctgcagctgctgcagtggcagcaaaattaactgcatcgacatcctcagcccag
atgctttcttatgtcctctcttcacttgcatctgaaggcgtcattggcaatccagtcaaa
gaatcatctgggggataccactctgaaaagagggctaagctcgagaacaaccagccttac
ataccaacccagaattcttcgcagcaaccactcgctccttttcaacgtcctgaatctttc
caagtcgcaaacactgctcagcagctaacttcaaatgatccaccacctcccccgtcatca
cctccaccaccacctccgctacctcctatggcaccatattcaattccccagtacatgcag
actgctgggtcaataaatgctgtgccatacacctacagcatgtcccagcagccaccacct
tcattgcctggctacccaggagtcgggactcaaatgacaggtattgctcccttttcaatg
cccccaacaaattcatacccaagttatcagagtgcagatggtaatttatacagccaacca
tcaaagatgccaatttcccggcaatag
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