Manihot esculenta (cassava): 110627200
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Entry
110627200 CDS
T05761
Name
(RefSeq) pre-mRNA-splicing factor syf2
KO
K12868
pre-mRNA-splicing factor SYF2
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110627200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110627200
Spliceosome [BR:
mesc03041
]
Complex B
Other components
Prp19-related factors
110627200
Complex C
110627200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYF2
LRRC37
Motif
Other DBs
NCBI-GeneID:
110627200
NCBI-ProteinID:
XP_021629170
LinkDB
All DBs
Position
11:complement(20191819..20196798)
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AA seq
306 aa
AA seq
DB search
MAGERRVHPDCINASNPYHECVEYCFSKIAEAKAQMSKTETEVVQDKRGNYESTALASEQ
DEEEKSVFEEKSDDDDNHPVQENVEGDGTQLTGRQKKLFELRLKMNEARKANQTAMVAEK
KKMEAVPESRGISKQKWLEDRKKKIGKLLDANGLDMKEAYMLDTQEAAEAKYKKWEKDPA
PFGWDVFNQKTLYDAYKKRSKNVEVDLEDYNKIKEADPEFYREASSLQYGKAPKLSEDKV
ERMVKELKDQEEKRKSFSRRRRFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLER
GTALPD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggctggagaaaggagagtgcacccagattgtataaatgcatctaatccttaccatgag
tgtgttgaatattgcttcagtaaaattgctgaagctaaggcgcaaatgagtaaaacagaa
acagaagttgtgcaagataaacgtggaaattatgagtccactgcacttgcttctgagcaa
gatgaggaggaaaaatcagtttttgaagaaaagtctgatgatgacgacaatcacccagtc
caggaaaatgtggaaggagatggtacacaacttacagggaggcagaaaaaattgtttgag
ttgaggctgaagatgaatgaggctagaaaagccaatcaaacagctatggtagctgaaaag
aaaaaaatggaagctgtgccagaatcaaggggtatttctaaacaaaaatggcttgaagat
aggaagaaaaaaattggaaaacttctagatgcaaatggtttggatatgaaagaagcatat
atgctagatacacaagaggcagctgaggcaaaatataaaaagtgggaaaaagatcctgct
ccatttggttgggatgttttcaatcagaagacattgtatgatgcatataaaaagcggtca
aagaacgtcgaggttgatctagaggattataacaaaattaaagaagctgatcctgagttc
taccgtgaagcttcaagtctccaatatggaaaggcacctaagttatctgaggacaaggtt
gagaggatggtgaaggaactcaaggaccaggaggagaaacgcaagtcatttagccgaagg
agaaggtttcgtgaagagaaggatattgactcgattaatgaccgtaatgagcatttcaat
aagaagattgaacgagcatttggtaaatacacgctggagattaagaacaatcttgagcga
ggaactgctttgcctgactaa
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